Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1468 ATGACTGCCGTTCCTTTGCTTATGATAGTGACTGCATTGGCAGTTAGTTCAGTGGTCCAGTCCTGCCCTCCTTCTGAATGGGCTGCTCTCATGGCCTTCAAGGCTTCCTTGAGTGAGCCCTACGTCGGAATCTTCCGTTCCTGGAGAGGCACCAACTGTTGCTACCGCTGGTACGGCGTCCACTGCGACCCCACCACTCGCCGCGTCGTCGACATCACCCTCCGTGGCCTCCTCGACGACCCCGTCTTCAAGCACCTCAACCACACCGGCTACATGTCCGGTTCCATCTCCCCTTCCATCTGCAACCTCTCCCAACTCTCCACCCTCTCCGTCTCCGACTGGAAGGCCATTTCCGGCGCCATCCCTCCCTGCATCCCTTCCTACTTGCCTGTTCTCCAAATCCTCGATCTCTCCGGCAACGTCTTGTCTGGTAACATCCCCCACGACATTGGGAGGCTCCGCCAGCTCACCATGCTCAACCTCGCTGACAATCATCTCTCCGGGAGACTCCCCGGCAGTCTGGTGAATCTCTCCACTTTAACGCACCTTGACCTCAGAAACAACGCGCTGGAGGGTCCCATTCCACGAGACATGGACAGGCTCCGAATGCTGAACCGGGCTTTGTTGAGCCACAATCGGCTCGTGGGCCCGATCCCCTGGACGATATCGAGAATATCTCGGCTGGCGGATTTGGACCTGTCTCTGAATCAAATATCGGGGCGGATTCCGAAGGCGCTGGGCACAATGCCGGTTCTGGATACGCTCAAGTTGAAGTATAATAGGATAAGAGGGAGTGTGCCGGCGAGTTTGCTGAGTTCAAGAATGAGCCATATGGATTTGAGGGGAAACGAGCTAGTGGGGCATATAGCGGACGTATTTCACGAAGGAACGTATTTTATAAATCTGGATTTATCGCACAACAAATTGAGAGGCAGTATACCCAAGTCCATGAAGCTGGCCAAGTATATTGGTCACTTGGATTTGAGTAACAACCTTCTCTGGGGCCGCATTCCAAGGGGTTCGCCTTTTAATCATCTCGATGCCTCCTCCTTCCATAACAATCCATGTCTATGCGGGAGCCCCTTAAAACCTTGCTGA 1098 0.5419 MTAVPLLMIVTALAVSSVVQSCPPSEWAALMAFKASLSEPYVGIFRSWRGTNCCYRWYGVHCDPTTRRVVDITLRGLLDDPVFKHLNHTGYMSGSISPSICNLSQLSTLSVSDWKAISGAIPPCIPSYLPVLQILDLSGNVLSGNIPHDIGRLRQLTMLNLADNHLSGRLPGSLVNLSTLTHLDLRNNALEGPIPRDMDRLRMLNRALLSHNRLVGPIPWTISRISRLADLDLSLNQISGRIPKALGTMPVLDTLKLKYNRIRGSVPASLLSSRMSHMDLRGNELVGHIADVFHEGTYFINLDLSHNKLRGSIPKSMKLAKYIGHLDLSNNLLWGRIPRGSPFNHLDASSFHNNPCLCGSPLKPC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1468 365 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Lele31g1468 365 Pfam Leucine rich repeat 123 166 IPR001611 GO:0005515
Lele31g1468 365 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 6 271 - -
Lele31g1468 365 Gene3D Ribonuclease Inhibitor 199 272 IPR032675 -
Lele31g1468 365 Gene3D Ribonuclease Inhibitor 275 365 IPR032675 -
Lele31g1468 365 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 196 289 - -
Lele31g1468 365 SUPERFAMILY L domain-like 21 364 - -
Lele31g1468 365 Pfam Leucine Rich repeat 178 192 IPR001611 GO:0005515
Lele31g1468 365 FunFam Nuclear pore complex protein NUP107 24 195 - -
Lele31g1468 365 Gene3D Ribonuclease Inhibitor 24 198 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1468 Lele-ChrLele31 20068510 20069607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1468 125 360 Receptor kinase-like Gene Family AT5G01890 29.661 2.07e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1270 11 19614064 19617863 Lele31g1468 31 20068510 20069607 CCT
Lele12g0052 12 512419 516194 Lele31g1468 31 20068510 20069607 CCT
Lele29g0080 29 477770 478867 Lele31g1468 31 20068510 20069607 hybridization
Lele30g1316 30 15524948 15526045 Lele31g1468 31 20068510 20069607 hybridization