Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1270 ATGTCTTCCTCCTTCTCTGCTACCCAGCACTTGAGTGCTACGCTCTCCGCCCCCATCCCTCGTCGCCGCAACAATTCCCCTCGGCCCTACTCGGTCAAATGTCATCTCTTTTCTTCCCATAATTCAGATTCCTCTAATAATCACGCTCTCTTCAAAACCCTTTCCAAGACTATCGCTTTCTCTTCCGCCGCCGCCCTCCTCCTCAACTCCACCCACCTCCCGGTCCTCCTCTCCAATGGATACGGAGATTTCGGCGGCGGCGGTGATGGCCTAGGTGGTGGCGGAGGCGGAGGGAACTGGTTCGGCGGCACAGGCGGAGATGGGAATGGGGGGTTCTTCTCTAGACTTTTCTCCCCGGCAGATGCTATTGCCGATGAGTCCCCTTCTCAGGAGTGGGATTCCCATGGGCTGCCGGCCAACATTGTTGTTCAACTCAATAAGCTCAGTGGATTTAAGAAATATAAAATTTCGGATATTCTATTCTTCGATAGGAGGAGGTGGAAAACAGTGGGCACCGAAGATTCCTTCTTCGAGATGGTTTCTCTGCGTCCAGGTGGTACATACACCAAGGCCCAGCTCCAGAAGGAGCTTGAGACTCTAGCTACCTGCGGAATGTTCGAGAAGGTAGATATGGAGGGCAAAACCAACGCCGATGGAAGTATCGGAATTACAATATCTTTCACTGAGAGCACGTGGCAGTCAGCCGATCGATTCCGCTGCATCAATGTGGGATTGATGCCGCAGTCGAAGCCCATTGAGATGGACGCGGATATGACTGATAAGGAGAAGCTGGAGTACTTTAGAAGTCAGGAGGAGGACTACAAGAGGAGAATTCAGAGGGCGAGGGCGTGTCTTCTGCCGATGCCTGTGCACATGGAGATTATGCAGATGCTGAAGGAGCAAGGAAAGGTGAGTGCCAGGCTGTTGCAGAAGATAAGGGATCGAGTCCAGAAGTGGTATCAGGATGAAGGCTTTGCGTGCGCACAGGTGGTTAATTTTGGGAACCTGAACACCAAGGAGGTCGTCTGTGAGGTTGTAGAAGGGGATATCACCCAATTGGTCATTCAATTCCAGGATAAGCTTGGCAATGTGGTTGAAGGTAACACTGATGTTGCCGTGGTCGAAAGAGAACTGCCGAAACAGCTTCGCCCAGGTTACATTTTCAACATTGAGGCAGGGAAGCAAGCTTTAAGAAACATTAACTCCCTTGCTCTGTTTTCAAACATTGAAGTGAATCCACGGCCTGATGAGAAGAATGAGGGAGGCATTATTGTTGAAATTAAGCTTAAAGAATTAGAACAGAAGACGGCAGAAGTCAGTACTGAGTGGAGTATTGTCCCAGGTCGAGGAGGACGTCCTACATTGGCTTCACTGCAGCCAGGAGGAACTGTTACTTTTGAACATCGGAATTTGCAAGGATTGAATAGATCTCTTATTGGTTCGGTGACAACTAGCAACTTCCTCAATCCTCAGGATGATCTGGCATTTAAGCTTGAGTATGTACATCCTTACTTGGATGGTGTATACAATCCAAATAACCGTACTCTTCGGGTAAGTTGCTTCAACAGTCGAAAGTTGAGTCCAGTATTCACTGGAGGGCCAGGGGTTGATGAAGTACCCCCAATATGGGTTGATCGTGGTGGTGTCAAAGCCAATATCACTGAGAATTTCACACGTCAGAGTAAATTTACTTATGGACTTGTGATGGAAGAGATAACAACACGTGATGAAAGTAGTCATATCTGTTCACAAGGTCAACGAGTATTGCCTAGTGGAGGAATTAGTGCAGATGGACCTCCAACCACCCTCAGTGGCACTGGCATTGATCGGATGGCATTTTTACAGGCCAATATTACACGTGATAACACAAAGTTTGTGAATGGAGCTATCATTGGAGACCGAAATGTGTTCCAGGTGGATCAAGGCCTTGGGATTGGCAGCAATTTCCCATTCTTCAATCGTCACCAGCTAACTGTGACACGATTTATCCAGCTGACGTCAGTGGAGGAAGGTGCTGGCAAAGCACCACCACCAGTGCTCGTTCTCCATAGCCATTATGGTGGTTGTGTAGGTGATCTTCCTAGTTACGATGCCTTTACTCTTGGAGGACCCTATTCTGTGAGGGGTTACAACATGGGTGAGCTTGGCGCAGCCAGAAACATCCTCGAGATTGCTGCCGAGTTACGGGTGCCCATCAAAGGGACGCATGTGTATGCCTTTGCAGAACATGGAAATGATCTTGGGAGTTCGAAGAACGTGAAAGGGAATCCCACAGAAGTGTATAGGCGAATGGGATATGGGTCGTCCTATGGAGTTGGTCTCAAGCTGGGTTTAGTTAGAGCAGAATACGCTGTTGATCATAACTCAGGAACCGGTGCATTATTCTTCCGTTTTGGGGAGAGATTTTGA 2409 0.4857 MSSSFSATQHLSATLSAPIPRRRNNSPRPYSVKCHLFSSHNSDSSNNHALFKTLSKTIAFSSAAALLLNSTHLPVLLSNGYGDFGGGGDGLGGGGGGGNWFGGTGGDGNGGFFSRLFSPADAIADESPSQEWDSHGLPANIVVQLNKLSGFKKYKISDILFFDRRRWKTVGTEDSFFEMVSLRPGGTYTKAQLQKELETLATCGMFEKVDMEGKTNADGSIGITISFTESTWQSADRFRCINVGLMPQSKPIEMDADMTDKEKLEYFRSQEEDYKRRIQRARACLLPMPVHMEIMQMLKEQGKVSARLLQKIRDRVQKWYQDEGFACAQVVNFGNLNTKEVVCEVVEGDITQLVIQFQDKLGNVVEGNTDVAVVERELPKQLRPGYIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIIVEIKLKELEQKTAEVSTEWSIVPGRGGRPTLASLQPGGTVTFEHRNLQGLNRSLIGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPNNRTLRVSCFNSRKLSPVFTGGPGVDEVPPIWVDRGGVKANITENFTRQSKFTYGLVMEEITTRDESSHICSQGQRVLPSGGISADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAIIGDRNVFQVDQGLGIGSNFPFFNRHQLTVTRFIQLTSVEEGAGKAPPPVLVLHSHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILEIAAELRVPIKGTHVYAFAEHGNDLGSSKNVKGNPTEVYRRMGYGSSYGVGLKLGLVRAEYAVDHNSGTGALFFRFGERF 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1270 802 Gene3D membrane protein fhac 350 433 - -
Lele11g1270 802 Pfam Omp85 superfamily domain 470 802 IPR000184 GO:0019867
Lele11g1270 802 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 456 802 - -
Lele11g1270 802 FunFam Protein TOC75-3 chloroplastic 456 802 - -
Lele11g1270 802 Gene3D membrane protein fhac 152 227 - -
Lele11g1270 802 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 139 799 IPR039910 -
Lele11g1270 802 FunFam Protein TOC75-3, chloroplastic isoform A 152 227 - -
Lele11g1270 802 FunFam Protein TOC75-3 chloroplastic 351 432 - -
Lele11g1270 802 TIGRFAM 3a0901s03IAP75: chloroplast envelope protein translocase, IAP75 family 82 802 IPR005689 GO:0006886|GO:0015450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1270 Lele-ChrLele11 19614064 19617863 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1270 11 19614064 19617863 Lele29g0080 29 477770 478867 CCT
Lele11g1270 11 19614064 19617863 Lele30g1316 30 15524948 15526045 CCT
Lele11g1270 11 19614064 19617863 Lele31g1468 31 20068510 20069607 CCT
Lele09g1266 09 21431737 21435539 Lele11g1270 11 19614064 19617863 hybridization
Lele10g1240 10 23447729 23451494 Lele11g1270 11 19614064 19617863 hybridization