Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele10g0745 | ATGAACACAGCAAGATTTATCAAGTGTGTCACAGTTGGTGATGGAGCTGTCGGAAAAACATGCATGCTGATTTCCTACACCAGCAACACTTTCCCTACGGACTATGTACCAACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAGTTAACCTGGGATTATGGGACACTGCTGGGCAGGAGGATTATAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTCTCTCTCATAAGCAGAGCCAGCTATGAGAACATCTCTAAAAAGTGGATTCCTGAACTGAGACATTATGCCCCAAATGTGCCAGTTATACTTGTGGGAACCAAGCTTGATTTGCATGAAGACAGACAGTATTTTATTGATCATCCTGGTGCTAAGCCTATAACTACCGCCCAGGGAGAAGAACTGAAGAAGGCCATCGGTGCTGCTTCATACATTGAGTGCAGCGCAAAAACTCAGCAGAATGTGAAGGCAGTGTTTGATGCTGCAATCAAGGTTGTGTTACAACCACCTAAGACAAGGAAAAGGCGAAAGAAGGCCAGACCCTGTGTAGTCCTATGA | 591 | 0.4518 | MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENISKKWIPELRHYAPNVPVILVGTKLDLHEDRQYFIDHPGAKPITTAQGEELKKAIGAASYIECSAKTQQNVKAVFDAAIKVVLQPPKTRKRRKKARPCVVL | 196 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele10g0745 | 196 | SMART | rho_sub_3 | 9 | 180 | IPR001806 | GO:0003924|GO:0005525 | |
| Lele10g0745 | 196 | CDD | Rop_like | 6 | 178 | - | - | |
| Lele10g0745 | 196 | FunFam | rac-like GTP-binding protein RAC2 | 5 | 193 | - | - | |
| Lele10g0745 | 196 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 178 | IPR027417 | - | |
| Lele10g0745 | 196 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 171 | IPR005225 | GO:0005525 | |
| Lele10g0745 | 196 | SMART | rab_sub_5 | 7 | 180 | - | - | |
| Lele10g0745 | 196 | ProSiteProfiles | small GTPase Rab1 family profile. | 1 | 196 | - | - | |
| Lele10g0745 | 196 | SMART | ras_sub_4 | 4 | 180 | - | - | |
| Lele10g0745 | 196 | ProSiteProfiles | small GTPase Rho family profile. | 1 | 177 | - | - | |
| Lele10g0745 | 196 | PANTHER | RHO FAMILY GTPASE | 5 | 194 | IPR003578 | GO:0005525|GO:0007264 | |
| Lele10g0745 | 196 | ProSiteProfiles | small GTPase Ras family profile. | 2 | 196 | IPR001806 | GO:0003924|GO:0005525 | |
| Lele10g0745 | 196 | Pfam | Ras family | 8 | 178 | IPR001806 | GO:0003924|GO:0005525 | |
| Lele10g0745 | 196 | Gene3D | - | 5 | 193 | IPR027417 | - | |
| Lele10g0745 | 196 | PRINTS | Transforming protein P21 ras signature | 30 | 46 | - | - | |
| Lele10g0745 | 196 | PRINTS | Transforming protein P21 ras signature | 155 | 177 | - | - | |
| Lele10g0745 | 196 | PRINTS | Transforming protein P21 ras signature | 47 | 69 | - | - | |
| Lele10g0745 | 196 | PRINTS | Transforming protein P21 ras signature | 7 | 28 | - | - | |
| Lele10g0745 | 196 | PRINTS | Transforming protein P21 ras signature | 109 | 122 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele10g0745 | Lele-ChrLele10 | 5742238 | 5743938 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele10g0745 | 7 | 180 | EF-hand Containing Proteins | AT3G63150 | 32.000 | 2.75e-16 | 74.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele29g0595 | 29 | 3651673 | 3652316 | CCT | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele30g0813 | 30 | 12314654 | 12315680 | CCT | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele31g0946 | 31 | 16755021 | 16755962 | CCT | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele32g0576 | 32 | 3582842 | 3583532 | CCT | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele10g0745 | 10 | 5742238 | 5743938 | ECH | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele11g0822 | 11 | 8310488 | 8313579 | hybridization | |
| Lele10g0745 | 10 | 5742238 | 5743938 | Lele12g0524 | 12 | 13523996 | 13525664 | hybridization |