Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0524 ATGAACACAGCAAGATTTATCAAGTGTGTCACAGTTGGTGATGGAGCTGTCGGAAAAACATGCATGCTGATTTCCTACACCAGCAACACTTTCCCTACGGACTATGTACCAACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAGTTAACCTGGGATTGTGGGACACTGCTGGGCAGGAGGATTATAACAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTCTCTCTCATAAGCAGAGCCAGCTATGAGAACATCTCTAAAAAGTGGATTCCTGAACTGAGACATTACGCCCCAAATGTGCCAGTTATACTTGTGGGAACCAAGCTTGATTTGCATGAAGACAGACAGTATTTTATTGATCATCCTGGTGCTAAGCCTATAACTACCGCCCAGGGAGAAGAACTGAAGAAGGCCATCGGTGCTGCTTCATACATTGAGTGCAGCGCAAAAGCTCAGCAGAATGTGAAAGCAGTGTTTGATGCTGCAATCAAGGTTGTGTTACAACCACCTAAGACAAGGAAAAGGAGAAAGAAGACCAGACCCTGTGTAGTCCTATGA 591 0.4518 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENISKKWIPELRHYAPNVPVILVGTKLDLHEDRQYFIDHPGAKPITTAQGEELKKAIGAASYIECSAKAQQNVKAVFDAAIKVVLQPPKTRKRRKKTRPCVVL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0524 196 PRINTS Transforming protein P21 ras signature 30 46 - -
Lele12g0524 196 PRINTS Transforming protein P21 ras signature 47 69 - -
Lele12g0524 196 PRINTS Transforming protein P21 ras signature 155 177 - -
Lele12g0524 196 PRINTS Transforming protein P21 ras signature 7 28 - -
Lele12g0524 196 PRINTS Transforming protein P21 ras signature 109 122 - -
Lele12g0524 196 CDD Rop_like 6 178 - -
Lele12g0524 196 ProSiteProfiles small GTPase Rab1 family profile. 1 196 - -
Lele12g0524 196 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Lele12g0524 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Lele12g0524 196 SMART ras_sub_4 4 180 - -
Lele12g0524 196 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Lele12g0524 196 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Lele12g0524 196 FunFam rac-like GTP-binding protein RAC2 5 193 - -
Lele12g0524 196 Gene3D - 5 193 IPR027417 -
Lele12g0524 196 SMART rab_sub_5 7 180 - -
Lele12g0524 196 ProSiteProfiles small GTPase Ras family profile. 2 196 IPR001806 GO:0003924|GO:0005525
Lele12g0524 196 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lele12g0524 196 PANTHER RHO FAMILY GTPASE 5 193 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0524 Lele-ChrLele12 13523996 13525664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0524 7 180 EF-hand Containing Proteins AT5G27540 27.011 5.27e-16 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0524 12 13523996 13525664 Lele12g0524 12 13523996 13525664 ECH
Lele09g0818 09 6499623 6511688 Lele12g0524 12 13523996 13525664 hybridization
Lele10g0745 10 5742238 5743938 Lele12g0524 12 13523996 13525664 hybridization