Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0822 ATGAAATTAACTCAACTCAACCTGTTAAAGCTAGCTTTATGGGATCCTGTCAAGCACTTAAGAGCAAAAGAAAATCCTCAACACAAATTTCAAGAGCTGGAAGAAAGTGTAAAGTGGAAAAAGGAAAATGGAGAAGAAGAAGAAATTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAGTTAACCTTGGATTATGGGACACTGCTGGGCAGGAGGATTATAACAGGCTTAGGCCTTTGAGCTATAGAGGAGCAGATGTGTTTTTGCTTGCCTTCTCTCTCATAAGCAGAGCCAGCTATGAGAACATCTCTAAAAAGTGGATTCCTGAACTGAGACATTATGCCCCAAATGTGCCAGTTATACTTGTGGGAACCAAGCTTGATTTGCGTGAAGACAGGCAGTATTTTATAGATCATCCTGGTGCTAAGCCTATAACTACTGCCCAGGCAAGTGCCTTATATAAACTATCTACCCACCAAAACGGAGAAGAACTGAAGAAGGCCATCGGTGCTGCTTCATACATAGAATGCAGCGCAAAAACTCAGCAGAATGTGAAGGCAGTGTTTGATGCTGCAATCAAGGTCGTGTTACAGCCACCTAAGACAAGGAAAAGGAGAAAGAAGACCAGACCCTGTGTAGTCCTATGA 657 0.4262 MKLTQLNLLKLALWDPVKHLRAKENPQHKFQELEESVKWKKENGEEEEIFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENISKKWIPELRHYAPNVPVILVGTKLDLREDRQYFIDHPGAKPITTAQASALYKLSTHQNGEELKKAIGAASYIECSAKTQQNVKAVFDAAIKVVLQPPKTRKRRKKTRPCVVL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0822 218 ProSiteProfiles small GTPase Rho family profile. 1 199 - -
Lele11g0822 218 Gene3D - 27 215 IPR027417 -
Lele11g0822 218 PANTHER RHO FAMILY GTPASE 46 215 IPR003578 GO:0005525|GO:0007264
Lele11g0822 218 CDD Rop_like 49 200 - -
Lele11g0822 218 Pfam Ras family 47 200 IPR001806 GO:0003924|GO:0005525
Lele11g0822 218 TIGRFAM small_GTP: small GTP-binding protein domain 46 193 IPR005225 GO:0005525
Lele11g0822 218 SMART rho_sub_3 48 202 IPR001806 GO:0003924|GO:0005525
Lele11g0822 218 SMART rab_sub_5 47 202 - -
Lele11g0822 218 SMART ras_sub_4 47 202 - -
Lele11g0822 218 PRINTS Transforming protein P21 ras signature 177 199 - -
Lele11g0822 218 PRINTS Transforming protein P21 ras signature 119 132 - -
Lele11g0822 218 PRINTS Transforming protein P21 ras signature 57 79 - -
Lele11g0822 218 ProSiteProfiles small GTPase Ras family profile. 1 218 IPR001806 GO:0003924|GO:0005525
Lele11g0822 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 200 IPR027417 -
Lele11g0822 218 ProSiteProfiles small GTPase Rab1 family profile. 4 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0822 Lele-ChrLele11 8310488 8313579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0822 64 202 EF-hand Containing Proteins AT3G63150 32.143 2.09e-10 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0822 11 8310488 8313579 Lele11g0822 11 8310488 8313579 ECH
Lele09g0818 09 6499623 6511688 Lele11g0822 11 8310488 8313579 hybridization
Lele10g0745 10 5742238 5743938 Lele11g0822 11 8310488 8313579 hybridization