Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0679 ATGAAGCCCATCAGTATTAACCCTAAAAGTTTCCGGCTCAATGCCAAGCAACTCTTTCGCTCCAAGAGGGATCGCTCCGCCGTCTCCAGATCCGATCCATCATCCTTCAGCTCTGGGACGTCGTCTTCTTCTTCCGATGACTCCACTCACAAGCCCGCTCCCGGCGCGTCCGGCTCCAGGACACCCACCAGCGTCTTGCCGGACATTTACCACGAATGGTCTGATCTGTCGAGCGAAACTCAGTCCGATTTGGCTCAGGCTTTGAGGCTCATAGACCGAGATGACGACGGCGTCATCTCCCGAGAAGAGTTGGAGGCCTTTCTGACCCGGCTCGGAGAGAGCCAGGAGGACGTGGCAATGATGCTCAGTGACGTGGATCCGGAAGGACTCGGGTGCATCAGAGTCGAAACGCTCATGAACCGGGTCGGGTCTGGGTGCGGTCCGGCGGCAGACTCCGATGATTTGAAGGAGGCGTTCGAGGTATTCGATGTGGATCGCGACGGGAAAATCTCGGCGGAGGAGCTGTTAGGGTTTTTCGAGGCTATCGGGGACGAGCGGTGCACGTTAGAGGAATGCCGGCGCATGATAAAAGGGGTGGATAAGAACGGGGATGGGTTTGTGTGCTTCGAGGAATTCTCTCGTATGATGGAGCTGCAGAGATGA 663 0.5671 MKPISINPKSFRLNAKQLFRSKRDRSAVSRSDPSSFSSGTSSSSSDDSTHKPAPGASGSRTPTSVLPDIYHEWSDLSSETQSDLAQALRLIDRDDDGVISREELEAFLTRLGESQEDVAMMLSDVDPEGLGCIRVETLMNRVGSGCGPAADSDDLKEAFEVFDVDRDGKISAEELLGFFEAIGDERCTLEECRRMIKGVDKNGDGFVCFEEFSRMMELQR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0679 220 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Lele08g0679 220 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Lele08g0679 220 ProSiteProfiles EF-hand calcium-binding domain profile. 187 220 IPR002048 GO:0005509
Lele08g0679 220 MobiDBLite consensus disorder prediction 30 64 - -
Lele08g0679 220 CDD EFh 154 216 IPR002048 GO:0005509
Lele08g0679 220 Gene3D - 144 220 - -
Lele08g0679 220 SUPERFAMILY EF-hand 71 216 IPR011992 -
Lele08g0679 220 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Lele08g0679 220 MobiDBLite consensus disorder prediction 21 64 - -
Lele08g0679 220 FunFam Probable calcium-binding protein CML35 139 220 - -
Lele08g0679 220 Pfam EF-hand domain pair 154 216 IPR002048 GO:0005509
Lele08g0679 220 Gene3D - 61 142 - -
Lele08g0679 220 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Lele08g0679 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 154 217 - -
Lele08g0679 220 SMART efh_1 83 111 IPR002048 GO:0005509
Lele08g0679 220 SMART efh_1 154 182 IPR002048 GO:0005509
Lele08g0679 220 SMART efh_1 191 219 IPR002048 GO:0005509
Lele08g0679 220 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Lele08g0679 220 Pfam EF hand 86 107 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0679 Lele-ChrLele08 4188358 4189020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0679 9 220 EF-hand Containing Proteins AT3G10190 50.233 1.33e-58 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0679 08 4188358 4189020 Lele13g1460 13 24099384 24102702 CCT
Lele08g0679 08 4188358 4189020 Lele14g1385 14 22489183 22496349 CCT
Lele08g0679 08 4188358 4189020 Lele15g0965 15 5628019 5628561 CCT
Lele08g0679 08 4188358 4189020 Lele16g0987 16 5571039 5574332 CCT
Lele08g0679 08 4188358 4189020 Lele08g0679 08 4188358 4189020 ECH
Lele05g0833 05 5056623 5057698 Lele08g0679 08 4188358 4189020 hybridization
Lele06g0682 06 4156542 4157204 Lele08g0679 08 4188358 4189020 hybridization