Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0833 ATGGTGCGTAATTATGGGGGCAAACTAGGGAAACTTCCTGGAAGCTCCCTGGTGCTACACTGGTGGACTAGATGGTACACCTCCGCTCCACCATTTAACCCCCCCACCTTCCTCACTCCTTCCCTTCAGCCCCCTCCCTCTTCTCCGTTCTATCTCTATCTCTCTGCTCAGCTTCTTCAATTTTACACAATGAAACTTATCAGTATTAACCCTAAAACTTTCCGGCTCAATGCCAGACAACTCTTTCGCTCCAAGAGGGATCGCTCCGCCGTCTCCAGATCCGATCCATCATCCTTCGGCTCTAGAACGTCGTCTTCTTCTTCCGATGACTCCACTCACAAGCCCGTTCCCGGCGCGCCTGGCTCAAGGACTCCCACCAGCGTCTTGCTGGACATTTACCCCGACTGGACTGATCCGTCGACCGAAATTCAGTCTGATTTAGCTCAGGCTTTGAGGCTCATAGACCGAGATGACGACGGCGTCATCTCGCGAGAAGAGCTGGAGGCCTTTCTGACCCGGCTCGGAGAGAGCCAAGAGGACGTAGCAATGATGCTCAGTGATGTTGATCCCAAGGGATTGGGGGGCATCAGAGTCGAAACTCTCATTAACCAGGTCGGGTCGGGGTGCGGCCCGGCGCCCGACTCCAATGACTTGAAGGAGGCGTTCGAGGTATTCGATTTGGATGGCGATGGGAAAATCTCGGCGGAGGAGCTGTTAGGGTTTTTCAAGGCCATAGGGGACGAGCGGTGCACGTTAGAGGAATGCCGGCGCATGATAAACGGGGTTGATGAGAACGGGGATGGGTTTGTGTGCTTCGAGGAATTTTCTCGTATGATGGAGGTCCAGAGATGA 852 0.5411 MVRNYGGKLGKLPGSSLVLHWWTRWYTSAPPFNPPTFLTPSLQPPPSSPFYLYLSAQLLQFYTMKLISINPKTFRLNARQLFRSKRDRSAVSRSDPSSFGSRTSSSSSDDSTHKPVPGAPGSRTPTSVLLDIYPDWTDPSTEIQSDLAQALRLIDRDDDGVISREELEAFLTRLGESQEDVAMMLSDVDPKGLGGIRVETLINQVGSGCGPAPDSNDLKEAFEVFDLDGDGKISAEELLGFFKAIGDERCTLEECRRMINGVDENGDGFVCFEEFSRMMEVQR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0833 283 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Lele05g0833 283 ProSiteProfiles EF-hand calcium-binding domain profile. 213 248 IPR002048 GO:0005509
Lele05g0833 283 ProSitePatterns EF-hand calcium-binding domain. 226 238 IPR018247 -
Lele05g0833 283 Gene3D - 125 207 - -
Lele05g0833 283 Gene3D - 208 283 - -
Lele05g0833 283 Pfam EF hand 149 170 IPR002048 GO:0005509
Lele05g0833 283 CDD EFh 217 279 IPR002048 GO:0005509
Lele05g0833 283 ProSiteProfiles EF-hand calcium-binding domain profile. 250 283 IPR002048 GO:0005509
Lele05g0833 283 SUPERFAMILY EF-hand 134 280 IPR011992 -
Lele05g0833 283 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 217 281 - -
Lele05g0833 283 Pfam EF-hand domain pair 216 279 IPR002048 GO:0005509
Lele05g0833 283 FunFam calmodulin-like protein 3 212 283 - -
Lele05g0833 283 MobiDBLite consensus disorder prediction 93 113 - -
Lele05g0833 283 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Lele05g0833 283 CDD EFh 146 243 IPR002048 GO:0005509
Lele05g0833 283 MobiDBLite consensus disorder prediction 85 127 - -
Lele05g0833 283 ProSitePatterns EF-hand calcium-binding domain. 155 167 IPR018247 -
Lele05g0833 283 SMART efh_1 217 245 IPR002048 GO:0005509
Lele05g0833 283 SMART efh_1 254 282 IPR002048 GO:0005509
Lele05g0833 283 SMART efh_1 146 174 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0833 Lele-ChrLele05 5056623 5057698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0833 64 283 EF-hand Containing Proteins AT3G10190 48.879 2.29e-54 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0833 05 5056623 5057698 Lele05g0833 05 5056623 5057698 ECH
Lele05g0833 05 5056623 5057698 Lele07g0872 07 5117006 5117668 hybridization
Lele05g0833 05 5056623 5057698 Lele08g0679 08 4188358 4189020 hybridization