Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0372 ATGGAGTCGTGCGATTGCGTTGAGCCAAAGAATTGGCCCCTAGATGAAATTATCGCGAAATGTCAGTACATGTCGGATATTCTAATAGCGCTTTCATATTTCACGATTCCTTTGGAACTGGTTTATTTTGTTCGGAAGACTGCAATCTTCCCATATAGATGGGTTCTTATCCAGTTCGGTGCTTTCATTATTTTTTGTGGAACATCTCACTTCTCAAGCCTCTGGACATTCTTCATGCATTCTAAACGTATCGCTGTGTTCATGGCAATATCCAAAGCCTTGTGTGCTTTTGTATCCTGCTCCACTGCACTCATGCTCGTTCACATCATCCCTGATCTCATGAGCGTCAAAACTCGCGAACGTCTGCTCAAGAACAAGGCTGAAGAACTTGACAGAGAAATGGGGCTTATTCTCACTCAAGAAGAAACTGGGAGGAATGTCAGAATGTTGACTCAGGAGATCAGAAGCACACTTGATAGGCATACCATTCTCAAAACTACTCTTATTGAGCTGGGTAGAACTTTGGGCTTGGAGGAATGTGCACTGTGGATGCCCTCAAGATGTGGTCAGCATCTTCAACTTTCACAAACATTAAGTGGTGCACAAGTCGGGTCGGATATCCCAACAAATCTTCCCGTTGTTAATGAAGTTTTCAGTAGTCCTCGAGCGATGAGAGTTCTACACACGTGTCCCTTGGTCACTATTAAACCTCTTGTTGGAAGATACATGACACCTGAAGTGGTTGCTGTGAGAGTGCCTCTTTTGTATCTCTCAGATTTTCCAATTAATAATTGGCCAGATCTTTCTGCAAAGAGATATGCCATCATGGTCTTGATCCTTCCACCTGACAGTGCTAGAAAGTGGCGAGATTATGAATTGGAACTTGTCGATGTAGTAGCAGATCAGGTGGCAGTGGCTCTTTCACATGCTGCTATATTGGAGGAGTCTATGAGAGCGCGGGATGAACTCATGGAACAGAATGTTCATTTGGATTTGGCACGACGAGAAGCGGAGGAGGCGGTCCATGCTCGGAGTGATTTCCTTGCGGTCATGAATCATGAGATGAGCACACCAATAAACGCTATTATGGCATTGTCGTCACTTCTCTTGGAGACTGAACTGAATCCTGAGCAGAGGATTGCGATAGAGACAACATTGAAGAACAGCAACCAGTTGGCAACACTTATTAGCGATGTTATAGATCTTTCTAGGCTAGCAGAGGGTAGCCTTCCTTTAGAATTGGGAAAATTTAACCTTCATGAGGCTCTGACAGAGGTTATTAAGTTGATAAAGCCTATAGCATCAGTGAAGAAGTTAGTTGTGGCTTTAACCCTGGACCCCGATCTGCCCATCTTAGCCATTGGAGACGAGAAACGTCTAATGCAAACTCTTTTAAACGTTGTGAGTAATGCTGTGAAATTCACTAGGCAGGGTTATGTTTCTGTGAGAGCATCTGTTGCAAAACCAAAAGTTTTACAGGATTGGCGAACTCCAGAATTTCATCCACCATCAAGTGATGGCCATCACTACATTATAATACAGGTTAAGGATTCAGGATGTGGCATTTCCTCACAAGATATTCCTCATATTTTTACCAAATTTGCTCAGTCTCAAAGAGGACCAAGCAGTGGTGCAGGGCTCGGACTAGCCATCTGTAAAAGATTCGTGAAACTGATGGAAGGTGAAATGTGGATTGAGAGTGAAGGCTTAGGGAAAGGGACTACGAATACATTTATAGTGAAGCTTGGAATTTGA 1755 0.4342 MESCDCVEPKNWPLDEIIAKCQYMSDILIALSYFTIPLELVYFVRKTAIFPYRWVLIQFGAFIIFCGTSHFSSLWTFFMHSKRIAVFMAISKALCAFVSCSTALMLVHIIPDLMSVKTRERLLKNKAEELDREMGLILTQEETGRNVRMLTQEIRSTLDRHTILKTTLIELGRTLGLEECALWMPSRCGQHLQLSQTLSGAQVGSDIPTNLPVVNEVFSSPRAMRVLHTCPLVTIKPLVGRYMTPEVVAVRVPLLYLSDFPINNWPDLSAKRYAIMVLILPPDSARKWRDYELELVDVVADQVAVALSHAAILEESMRARDELMEQNVHLDLARREAEEAVHARSDFLAVMNHEMSTPINAIMALSSLLLETELNPEQRIAIETTLKNSNQLATLISDVIDLSRLAEGSLPLELGKFNLHEALTEVIKLIKPIASVKKLVVALTLDPDLPILAIGDEKRLMQTLLNVVSNAVKFTRQGYVSVRASVAKPKVLQDWRTPEFHPPSSDGHHYIIIQVKDSGCGISSQDIPHIFTKFAQSQRGPSSGAGLGLAICKRFVKLMEGEMWIESEGLGKGTTNTFIVKLGI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0372 584 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Lele05g0372 584 PRINTS Bacterial sensor protein C-terminal signature 543 561 IPR004358 GO:0016310|GO:0016772
Lele05g0372 584 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Lele05g0372 584 Coils Coil 320 340 - -
Lele05g0372 584 CDD HisKA 343 404 IPR003661 GO:0000155|GO:0007165
Lele05g0372 584 FunFam Ethylene response sensor 137 308 - -
Lele05g0372 584 Pfam His Kinase A (phospho-acceptor) domain 343 408 IPR003661 GO:0000155|GO:0007165
Lele05g0372 584 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 582 IPR003594 -
Lele05g0372 584 SUPERFAMILY GAF domain-like 159 319 - -
Lele05g0372 584 ProSiteProfiles Histidine kinase domain profile. 350 584 IPR005467 -
Lele05g0372 584 SMART HKATPase_4 455 584 IPR003594 -
Lele05g0372 584 Gene3D - 139 308 IPR029016 -
Lele05g0372 584 Gene3D - 407 584 IPR036890 -
Lele05g0372 584 Coils Coil 113 133 - -
Lele05g0372 584 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 408 IPR036097 GO:0000155|GO:0007165
Lele05g0372 584 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Lele05g0372 584 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 581 IPR036890 -
Lele05g0372 584 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 584 - -
Lele05g0372 584 FunFam Ethylene receptor 1 310 406 - -
Lele05g0372 584 SMART gaf_1 159 317 IPR003018 GO:0005515
Lele05g0372 584 Pfam GAF domain 159 307 IPR003018 GO:0005515
Lele05g0372 584 FunFam Ethylene receptor 1 408 584 - -
Lele05g0372 584 Gene3D - 309 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0372 Lele-ChrLele05 2136344 2138718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0372 1 584 Miscellaneous Gene Families AT2G40940 68.367 0.0 793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0372 05 2136344 2138718 Lele05g0372 05 2136344 2138718 ECH
Lele05g0372 05 2136344 2138718 Lele07g0390 07 2212741 2215234 hybridization
Lele05g0372 05 2136344 2138718 Lele08g0196 08 1204517 1205804 hybridization