Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0249 ATGCTTTTGTGGTTGGCTTTCTGTTTATGGGCTTTCTGTTTATGGTTGGCTTTAACCTGCTCGCTGCTTCCTTCTTTCTCTTCCGGGCTTCTCAGAATTGGTTTGAAGAAGAGACCTCTTGACCTTCAGGGCATCAAAGCTGCCAGAATTCTAAGAGAACAGCTAAATCCAGGCAGACCAGTGAAGGATACTCATAACTATATTGTTAGTTCAGATGAGGATATAGTACCTCTGAAGAATTATTTAGATGCGCAATATTTTGGAGAGATTGGAATTGGCACACCGCCACAAACCTTCACTGTCATATTTGATACTGGAAGTTCCAAGCTGTGGGTTCCATCATCAAAGTGCTATTTTTCAGATCAAGAGATCTCTGTTGGAAAAGCTGTTCCAGTATAATATAATATGGTGGATCAAGAGCTTGTAAGTGAAGAGGTATTCTCTTTTTGGCTAAATGGGGATCCAGATTCAGAAGAGGGTGGCGAATTAGTTTTTGGAGGTCTGTCGACAGGGCGGCTTGCTGCTGCAGTTGATTCCGGAACATCGTTGCCTGCTGGTCCCACTTCTGTTGTGACTGAAATCAACCATGCCATTGCAGCTGAAGGAATCAGACTGCCAAGTCCAGCTGGAGAGTTCACAATAAGCTGTGATAGTCTATCTCAAATGCCAAACATTACACTTACAATCGGAGAAAAACTCTTCGACCTCACCCCACAGCAGTATGTTCTGAAAACTGGAGAAGGACTGGCCGAAGTTTGCATTAGTGGGTTTATGGCATTTGATTTTCCTCCTCCACGGGGTCCCCTCTGGATTCTGGGCGACATTTTCATGAGGGTATCCCACACGGTGTTTGACTATGGCAATCTCCAACTAGGGTTTCTCTTCACTATGAGGTCCAAGCATCTGTGGATAGCTTTCTGTTTATGGGCCTTAACATGCTCACTTCTTCCTTCGTTCTCTTCTGGGATTCTCAGAATTGGTTTGAAGAAGAGACCTCTTGATCTTCAAAGAATTCGGGCTGCAAGAGCTGCAAGGGAAGAACTGAGACCAGGAAGACCAGTGAAGGGTTCATATCAGTATATTAGTAATTCAAACGATGGAGATATACTACCTCTCAAAAATTATATGGATGCGCAATATTTTGGAGAGATTGGAATAGGCACACCCCCACAGATCTTCACTGTCATATTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCATCATGGTGCTATTTTTCGGTTGCCTGTTATGTCCATTCCTGGTACAAGGCTAGCAAATCCAGTACATACATTGAGAATGGAACATCGTGTGAGATACAATATGGGTCGGGATCGTTATCTGGTTTTTTCAGTCAAGATGACGTTAAAGTTGGTGATGCGGTCGTAAAGCATCAAGATTTCATTGAGGCTACTCGAGAGAAAAGTTTTTCCTTTGCACTCGCCAAGTTTGACGGGATACTTGGACTTGGGTTTCAGGAAATCTCAGTTAAGAAAGCAGTGCCGGTTTGTGCCTTTGGGTTGTATCCTGAAATTACTGATCCACTATCAAATCATAGGTACAATATGGTGGATCACGATCTTGTTAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGTGGATCCGGAGGCAGAAGCGGGTGGTGAAATAGTATTTGGAGGTGTTGATCCAAATCACTTCAAAGGAAAACATACTTATGTTCCAATTACTAGAAAAGGTTACTGGCAGATTGAAATAGGAGATTTTCTCATTGGAGGTCTTTCAACAGGTGTGTGCAAGGGTGGATGTGCTGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGTCCAACCTCGGTTGTGGCCGAAATCAACCATGCCATTGGAGCTGAAGGAGTTGTGAGTTCAGAATGTAAGGAAGTAGTTTCTCAATATGGAGAAAGGATATGGGATCTATTAGTATCAGGGGTGGAGCCTAATGAAGTATGTTCACAACTTGGTTTATGCTCTGCATTTAGGGATCAATCTAAGAGCAATGGGATCAAAATGGTGACTGAAACAATAGAAAGAGGGGGCATGTCAGCTGGAGATGATAATATGTGCTCTCTGTGTGAGATGGCTGTTGTTTGGGTCCAGAATCAACTAAAACGGAAGTTATGTGAAAGACTGCCAAGCCCTGGTGGAGAATCCACAATAAGTTGTGATGGTATTTCTCAGATGCCAAACATCACAATTACTATCGGAGATAAACTTTTCAACCTCATTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGAGATGCAGCAACTTGCCTCAGTGGGTTTACAGCTTTTGATATTCCTCCTCCTCAAGGCCCTCTCTGGATCCTTGGCGATGTTTTTATGAGGGTATATCACACGGTGTTTGACTATGGCAATCTCCAAGGCATTGCAAGCTTTGACTTGAAAGACCCTTGGTTTATCTTCATTATGAGGTCCAATCATCTGATGATAGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGATTCTCAGAATTGGTTTGAAGAAGAGACCTCTACACATTCAAAGCATTCGGGCTGCAAGAGCTGCAGGGGAAGAAGTACTGAGACCAGGACGACTAGGGAAGGGTTCATATCAGATTTCATCGAGGTACAATATGGTGGATCAAGATCTTGTTACTGAGAAGGTGTTCTCTTTATGGCTCAATGTGAATCCGGAGGCAGAAGAGGGTGGTGAAATAGTATTTGGAGGTGTGGATCCAAATCATTTCAAAGGAAAACATACTTATGTTCCAATTACTAGAAAAGGTTTATGGCAGATTGAAATAGGAGATTTTCGCATCGGCGGTCTTTCAACAGGTGTGTGCAAGGGTGGGTGTGCTGCTATTGTGGATTCAGGATCATCTTTGCTTGTTGGTCCAATCTCAGTTGTGGCTGAAATCAACCATGCCATTGGAGCCGAAGGACTTTTTAGTTCCGAATGTAAGGAATTAGTTCATCAATTTGCAGACAAGATATGGGATCTACTAGTATCAGGGGTGGAGCCCCATGAAGTATGTTCCCATCTTGGTTTATGCTCTGCATATAGGGATCAACCTAATAGCGCTGGGATTGAGATGGTGACTGAAGCAATAGAAAGAGAGGGTATGTCAGGTAGAGATAATAATATGTGCTCTTTTTGTGAGATGAATGTAGTTTGGATCCAGAATCAACTGAAACGAAAGGAAAACAAGGAAAAAGTAATCCACTACATAAATCAGTTATGTGAAAGACTGCCAAGTCCTGCAGGAGAATCCACAGTAAGTTGTGACGGTATTTCTCAGATGCCAAACATCACAATTACCATCGGAGATAAACTTTTCAACCTCACTCCAGAGCAGTACATTGTGAAAGCTGGACAAGGCAAAGCAGCAATTTGCGTCAGTGGGTTTCAAGCTTTTGATATCCCCACTCCTCAGGGCCCTCTCTGGATCCTGGGCGATGTGTTTATGAGGGCATATCATACGGTGTTTGACTATGGGAATCTCAAAGTGGGTTTTGCAGAGGCTGCCTAG 3555 0.4307 MLLWLAFCLWAFCLWLALTCSLLPSFSSGLLRIGLKKRPLDLQGIKAARILREQLNPGRPVKDTHNYIVSSDEDIVPLKNYLDAQYFGEIGIGTPPQTFTVIFDTGSSKLWVPSSKCYFSDQEISVGKAVPVXYNMVDQELVSEEVFSFWLNGDPDSEEGGELVFGGLSTGRLAAAVDSGTSLPAGPTSVVTEINHAIAAEGIRLPSPAGEFTISCDSLSQMPNITLTIGEKLFDLTPQQYVLKTGEGLAEVCISGFMAFDFPPPRGPLWILGDIFMRVSHTVFDYGNLQLGFLFTMRSKHLWIAFCLWALTCSLLPSFSSGILRIGLKKRPLDLQRIRAARAAREELRPGRPVKGSYQYISNSNDGDILPLKNYMDAQYFGEIGIGTPPQIFTVIFDTGSSNLWVPSSWCYFSVACYVHSWYKASKSSTYIENGTSCEIQYGSGSLSGFFSQDDVKVGDAVVKHQDFIEATREKSFSFALAKFDGILGLGFQEISVKKAVPVCAFGLYPEITDPLSNHRYNMVDHDLVSEKVFSFWLNVDPEAEAGGEIVFGGVDPNHFKGKHTYVPITRKGYWQIEIGDFLIGGLSTGVCKGGCAAIVDSGTSLLAGPTSVVAEINHAIGAEGVVSSECKEVVSQYGERIWDLLVSGVEPNEVCSQLGLCSAFRDQSKSNGIKMVTETIERGGMSAGDDNMCSLCEMAVVWVQNQLKRKLCERLPSPGGESTISCDGISQMPNITITIGDKLFNLIPEQYILKTGEGDAATCLSGFTAFDIPPPQGPLWILGDVFMRVYHTVFDYGNLQGIASFDLKDPWFIFIMRSNHLMIAFCLWALTCSLLPSFSSGILRIGLKKRPLHIQSIRAARAAGEEVLRPGRLGKGSYQISSRYNMVDQDLVTEKVFSLWLNVNPEAEEGGEIVFGGVDPNHFKGKHTYVPITRKGLWQIEIGDFRIGGLSTGVCKGGCAAIVDSGSSLLVGPISVVAEINHAIGAEGLFSSECKELVHQFADKIWDLLVSGVEPHEVCSHLGLCSAYRDQPNSAGIEMVTEAIEREGMSGRDNNMCSFCEMNVVWIQNQLKRKENKEKVIHYINQLCERLPSPAGESTVSCDGISQMPNITITIGDKLFNLTPEQYIVKAGQGKAAICVSGFQAFDIPTPQGPLWILGDVFMRAYHTVFDYGNLKVGFAEAA 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0249 1184 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 395 406 IPR001969 GO:0004190|GO:0006508
Lele05g0249 1184 Gene3D Acid Proteases 555 801 IPR021109 -
Lele05g0249 1184 ProSiteProfiles Peptidase family A1 domain profile. 380 805 IPR033121 -
Lele05g0249 1184 PRINTS Pepsin (A1) aspartic protease family signature 386 406 IPR001461 GO:0004190|GO:0006508
Lele05g0249 1184 PRINTS Pepsin (A1) aspartic protease family signature 548 561 IPR001461 GO:0004190|GO:0006508
Lele05g0249 1184 PRINTS Pepsin (A1) aspartic protease family signature 598 609 IPR001461 GO:0004190|GO:0006508
Lele05g0249 1184 PRINTS Pepsin (A1) aspartic protease family signature 781 796 IPR001461 GO:0004190|GO:0006508
Lele05g0249 1184 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 962 973 IPR001969 GO:0004190|GO:0006508
Lele05g0249 1184 Pfam Saposin-like type B, region 1 1057 1093 IPR007856 GO:0006629
Lele05g0249 1184 Gene3D Acid Proteases 122 167 IPR021109 -
Lele05g0249 1184 Gene3D Acid Proteases 859 918 IPR021109 -
Lele05g0249 1184 Gene3D Acid Proteases 324 554 IPR021109 -
Lele05g0249 1184 Gene3D Acid Proteases 31 121 IPR021109 -
Lele05g0249 1184 Gene3D Acid Proteases 168 295 IPR021109 -
Lele05g0249 1184 Pfam Eukaryotic aspartyl protease 379 800 IPR033121 -
Lele05g0249 1184 FunFam Vacuolar aspartic proteinase 159 295 - -
Lele05g0249 1184 SMART sapb_4 590 662 IPR008139 -
Lele05g0249 1184 SMART sapb_4 954 1026 IPR008139 -
Lele05g0249 1184 ProSiteProfiles Peptidase family A1 domain profile. 1 294 IPR033121 -
Lele05g0249 1184 ProSiteProfiles Saposin B type domain profile. 990 1030 IPR008139 -
Lele05g0249 1184 Pfam Eukaryotic aspartyl protease 172 293 IPR033121 -
Lele05g0249 1184 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 15 120 IPR001461 GO:0004190|GO:0006508
Lele05g0249 1184 Pfam Eukaryotic aspartyl protease 122 168 IPR033121 -
Lele05g0249 1184 Pfam Saposin-like type B, region 2 630 662 IPR008138 -
Lele05g0249 1184 Pfam Saposin-like type B, region 2 994 1026 IPR008138 -
Lele05g0249 1184 SUPERFAMILY Saposin 991 1093 IPR011001 -
Lele05g0249 1184 ProSiteProfiles Peptidase family A1 domain profile. 886 1181 IPR033121 -
Lele05g0249 1184 Gene3D - 990 1093 - -
Lele05g0249 1184 FunFam Lysosomal aspartic protease 1061 1183 - -
Lele05g0249 1184 SUPERFAMILY Acid proteases 879 1183 IPR021109 -
Lele05g0249 1184 ProSiteProfiles Saposin B type domain profile. 626 666 IPR008139 -
Lele05g0249 1184 FunFam Lysosomal aspartic protease 366 624 - -
Lele05g0249 1184 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Lele05g0249 1184 ProSiteProfiles Saposin B type domain profile. 1054 1095 IPR008139 -
Lele05g0249 1184 SUPERFAMILY Saposin 627 717 IPR011001 -
Lele05g0249 1184 FunFam Lysosomal aspartic protease 858 988 - -
Lele05g0249 1184 SUPERFAMILY Acid proteases 304 799 IPR021109 -
Lele05g0249 1184 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 598 609 IPR001969 GO:0004190|GO:0006508
Lele05g0249 1184 SUPERFAMILY Acid proteases 11 293 IPR021109 -
Lele05g0249 1184 Gene3D Acid Proteases 919 1184 IPR021109 -
Lele05g0249 1184 Pfam Eukaryotic aspartyl protease 884 1183 IPR033121 -
Lele05g0249 1184 Pfam Eukaryotic aspartyl protease 85 120 IPR033121 -
Lele05g0249 1184 Gene3D - 626 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0249 Lele-ChrLele05 1383432 1395055 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0249 05 1383432 1395055 Lele06g0065 06 421826 429067 ECH
Lele05g0249 05 1383432 1395055 Lele05g0249 05 1383432 1395055 ECH
Lele05g0249 05 1383432 1395055 Lele07g0262 07 1424064 1427029 hybridization
Lele05g0249 05 1383432 1395055 Lele08g0068 08 400893 405071 hybridization