Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0507 ATGGGCGCAAGTCGAAAGCTTCAGGGCGAGATAGATCGCGTTCTCAAGAAGGTCCAAGAAGGTGTTGATGTCTTCGATAGTATCTGGAACAAGGTTTACGATACTGACAATGCTAACCAGAAGGAGAAATTTGAGGCAGACCTGAAGAAGGAGATTAAGAAACTCCAGAGGTACAGAGACCAAATTAAGAATTGGATACAGTCTAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCTCTGGTGGATGCTCGGAAGCTCATCGAGCGTGAAATGGAAAGATTTAAGATCTGTGAAAAGGAAACTAAGACCAAAGCGTTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCAAAGGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAATAATTTGTGTTGGCTGTTGCAATGGGAAAAAGCAGACCACCTAGATTGGTATGATTATGAAGTAACCATTGGGCGTTCATTTTGTGGGACTGATGGTTTACCTTTCTCTGGCCGTTCACATGTTACATTTGTTTTCCAGACACATCTAGAGATGTCAATTGCTCGACACAAGGCTCATATAAAAAAATGTGAGCTACTCTTGAGGCTGCTAGACAATGATGAATTAAGTCCTGAGCAGGTTAACGATGTCAAATATTTCTTGGACGACTATGTGGAGCGTAATCAGGAGGACTTTGATGAATTCAGTGATGTTGATGAGCTATACAGTTCATTACCTTTAGACAAGGTGGAGTCTCTCGAAGATCTTGTCACAATTGGTCCACCTGCTATTGCTAAGGTTGCACTTGGTCTTAGCTTGAAGACATCTTTAGCTGCATCAGCTTCACAAACATCTGAACAAGCTGATGACACTGCTTCCCAGGATAGCAATTCTGATACTGTGGTCAGAACACCACCTTCTAAAAGTAGTGGAATCAGTTCTGCTATGTCGACACCAGCTGGAAACCATTCTACTCCTGTTTCTTTGAATGTTTCGTCTCAGAATTTGTCTGGTGCAACTACTGCAGCATCGGTCCTTCCTGGTTCAAATTCTGTTCAGACTGCTCTGGAGAATACTGGTGCTACTAATTCTTCATATGTAAATCCGCCTACCTCTCTGAAGGAAGATGAGGTTAATGGCTTCCCTGGCCGGAGAGCATCTCCATCACTTTCTGATGCTGCACATGCGAGAGGCATCAGTAGAAACAGCCTACCAAATCAAGTGACATCTGGTATCCCTCTTGCTTCCAGCAATGGGGCCCTTGGTTCGGTCCCTTCAGCCTCTGATATAACAAAGAGGAACTTACTGGAAGCTGATGACAGGCTTGGAAGTAGTGGGATAGGGCAGCCTCTTCTATCTCCCCTAAGTAATAGAATGATGTTGCCTCAGGCTTTGAAGGCTAACGATGGAACCGGTTCAGTTGACCCTAATAATGTTAATGAGGCTGCTGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGGTGTTCCTGGCATGCAGTGGAGACCAGGAAGTCTTTTCCAGAACCAGAATGAGACGGTAATTCTTTTATCTTTTTCTTGTTCTGTTCGGTATTCATGTCATTCAAAGGGTCAACTTCGTGGAAGAACTGAAATAGCACCTGATCAGAGAGAAAAGTTTCTGCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCATAGTACCCTTGGTGTGCCTTCTCTTGCTGGTGGAAGTCATAAGCAGTTTTCTGCTCAGCAGCAAAATCCTCTCTTGCAGCAGGCATCAGGTCTCAGTAGCATTTCATCCACCTCATTACAGCAGCCATCCAATTCTATCCTTTCTCCATCTAGTCAACAGCCAATGATACCAAGTGTTTCTCAAGATTCTGATGACAATTCTAAACTTGAAGAACATCAGCAACAACAGAATACTCCTGATGATTCAGCGTCTGAATCTACTGCCAGTAATGGGCTTGGCAAGAATCTTCTAAATGAAGAGGATTTGAAATCCACATATATTGTAGATTCTCCTCAGGCAGGAGTATCTGGTTCTCTTACTGAGCCGGCTCAGAGCTCCAGAGATGCCAATTTCTCTCCTGGTCAACCTTTACAGTCCAATCAGCCTTCTGGTAACCTTGGTGTTATTGGAAGAAGAAGTGTTGCCGATTTTGGAGCCATTGGTGATAATCTTAGTGGAATAAATGTCAATTCTGGCGGAGGGCGTGACCATTTATTTAATTTGCAGATGCTTGAAGCAGCTTACTACAAACTTCCACAACCCAAAGATTCAGAACGTCCAAGGATTTATACTCCCAAGCACCCAGCAATAACACCTCCAAGTTATCCTCAAGTACAGGCCCCCATTGTCAGTAATCCCGCCTTCTGGGAGAGAGTAGGTCTTGAACCATATGGCACTGACACCCTGTTCTTTGCATTTTATTATCAACAGAACACTTATCAACAATATTTGGCTGCAAAAGAACTAAAGAAACAGTCTTGGAGATATCACAGAAAATATAACACATGGTTTCAGAGACATGAAGAGCCAAAAGTCGCTACGGATGAATTTGAGCAGGGGACATATGTATACTTCGATTTTCATATTGCAAATGATGACCTGCAACATGGATGGTGTCAAAGAATCAAGACCGAGTTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTAGTGTATAG 2679 0.4334 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKNWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLCWLLQWEKADHLDWYDYEVTIGRSFCGTDGLPFSGRSHVTFVFQTHLEMSIARHKAHIKKCELLLRLLDNDELSPEQVNDVKYFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPAIAKVALGLSLKTSLAASASQTSEQADDTASQDSNSDTVVRTPPSKSSGISSAMSTPAGNHSTPVSLNVSSQNLSGATTAASVLPGSNSVQTALENTGATNSSYVNPPTSLKEDEVNGFPGRRASPSLSDAAHARGISRNSLPNQVTSGIPLASSNGALGSVPSASDITKRNLLEADDRLGSSGIGQPLLSPLSNRMMLPQALKANDGTGSVDPNNVNEAAAVSGRVFSPSGVPGMQWRPGSLFQNQNETVILLSFSCSVRYSCHSKGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLGVPSLAGGSHKQFSAQQQNPLLQQASGLSSISSTSLQQPSNSILSPSSQQPMIPSVSQDSDDNSKLEEHQQQQNTPDDSASESTASNGLGKNLLNEEDLKSTYIVDSPQAGVSGSLTEPAQSSRDANFSPGQPLQSNQPSGNLGVIGRRSVADFGAIGDNLSGINVNSGGGRDHLFNLQMLEAAYYKLPQPKDSERPRIYTPKHPAITPPSYPQVQAPIVSNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELSV 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0507 892 MobiDBLite consensus disorder prediction 362 413 - -
Lele08g0507 892 Pfam NOT2 / NOT3 / NOT5 family 748 886 IPR007282 GO:0006355
Lele08g0507 892 MobiDBLite consensus disorder prediction 636 653 - -
Lele08g0507 892 PANTHER CCR4 NOT-RELATED 24 889 IPR040168 GO:0030015
Lele08g0507 892 Coils Coil 41 68 - -
Lele08g0507 892 MobiDBLite consensus disorder prediction 551 565 - -
Lele08g0507 892 MobiDBLite consensus disorder prediction 669 707 - -
Lele08g0507 892 MobiDBLite consensus disorder prediction 285 334 - -
Lele08g0507 892 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 250 IPR007207 GO:0005634|GO:0006355
Lele08g0507 892 Gene3D - 733 887 IPR038635 -
Lele08g0507 892 MobiDBLite consensus disorder prediction 667 708 - -
Lele08g0507 892 PIRSF NOT_su_3_5 1 892 IPR012270 GO:0006355|GO:0030015
Lele08g0507 892 MobiDBLite consensus disorder prediction 572 623 - -
Lele08g0507 892 MobiDBLite consensus disorder prediction 551 653 - -
Lele08g0507 892 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 732 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0507 Lele-ChrLele08 3081512 3091200 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0507 08 3081512 3091200 Lele08g0507 08 3081512 3091200 ECH
Lele05g0675 05 3971701 3981846 Lele08g0507 08 3081512 3091200 hybridization
Lele06g0498 06 3028009 3036105 Lele08g0507 08 3081512 3091200 hybridization