Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0243 ATGTGTTCCCTAAGCCGCAATGACTTGCAGAGGATATTTGAGAAGCTGGACAAGAGCGGCGACGGTTATATAAGCCTTGAGAATCTAAAGAGACTAATGGAGAATATAGGTTTCAGGTTTGGAGCAGAGGAGGTTGAGTCTCTTGTGGGGAAGAAGAGACTGAACTTGGACGAGTTCTTGATGTTTTACGATTCCATATCGAGTTGTAATAGTAGGGGCGAGACGAGAGGGGGTGATGAAGATCAAGAAGAAGAGCTAGTGAAGGCGTTCGAGGTGTTCGACATGGACGGAGATGGATTCATCAGCAGCCAAGAGGTGGAGTGTGTGCTCAAGAGGCTGGGCTTGTGGGATCCCAAGAGATGCAGAGATTGCGCCTCCATGATCGGCGTTTATGACTCCAATTCCGATGGCCTCCTTGATTTCCAGGAATTTAAGAACATGATGTTGCTTACCATCCCTTGA 462 0.4762 MCSLSRNDLQRIFEKLDKSGDGYISLENLKRLMENIGFRFGAEEVESLVGKKRLNLDEFLMFYDSISSCNSRGETRGGDEDQEEELVKAFEVFDMDGDGFISSQEVECVLKRLGLWDPKRCRDCASMIGVYDSNSDGLLDFQEFKNMMLLTIP 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0243 153 CDD EFh 85 148 IPR002048 GO:0005509
Lele26g0243 153 Pfam EF-hand domain pair 84 148 IPR002048 GO:0005509
Lele26g0243 153 FunFam Calmodulin A 66 151 - -
Lele26g0243 153 ProSiteProfiles EF-hand calcium-binding domain profile. 119 153 IPR002048 GO:0005509
Lele26g0243 153 SUPERFAMILY EF-hand 6 149 IPR011992 -
Lele26g0243 153 SMART efh_1 85 113 IPR002048 GO:0005509
Lele26g0243 153 SMART efh_1 8 36 IPR002048 GO:0005509
Lele26g0243 153 SMART efh_1 123 151 IPR002048 GO:0005509
Lele26g0243 153 Pfam EF hand 8 35 IPR002048 GO:0005509
Lele26g0243 153 ProSitePatterns EF-hand calcium-binding domain. 94 106 IPR018247 -
Lele26g0243 153 PANTHER CALCIUM BINDING PROTEIN 55 148 - -
Lele26g0243 153 Gene3D - 4 64 - -
Lele26g0243 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lele26g0243 153 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Lele26g0243 153 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Lele26g0243 153 Gene3D - 71 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0243 Lele-ChrLele26 1413910 1414371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0243 2 149 EF-hand Containing Proteins AT1G21550 43.791 5.12e-37 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0274 02 1554444 1569744 Lele26g0243 26 1413910 1414371 CCT
Lele04g0281 04 1654502 1664999 Lele26g0243 26 1413910 1414371 CCT
Lele26g0243 26 1413910 1414371 Lele27g1854 27 23367769 23368412 hybridization
Lele26g0243 26 1413910 1414371 Lele28g0255 28 1470020 1470756 hybridization