Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0260 ATGTTCAAAGCAAAAGTCAAATTGACAAACCAAAAAGGTCAAACAGTTTGTAAGACAAGAAAGGGAAGCGGAAGTCCTCTCGGAACAGTCCGAAAGCAAAAAGTCACGAACCCCCAAATCGGGTCTTCCTTTTTCAAATACCTCTCGTCGACATCCCGATCTCTTCTGATTCTAGTACTACTCCAATTGGATCCTCCTCTTATTTTTCGAAACACAGGTTTCAATTTACTGAAGATTAAAAGACGTCATTGGAGTCAGAGAGACATGGCTAATAATGCAGCAGCCTGTGCAGAGAGGGCAACCAGTGACATGCTGATTGGCCCGGACTGGGCAATTAACATAGAGTTGTGTGATATCATTAATATGGACCCCAGGCAAGCAAAGGATGCATTAAAGATACTCAAGAAGCGTTTGAGCAGTAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGCATTGGAGACTCTCAGCAAAAATTGTGGTGAAAATTTGTTTCAGCAGATCATTGAGCGGGATATCTTACATGAGATGGTTAAGATAGTGAAGAAGAAGCCTGACTTAAATATCAGGGAAAAGATACTGATTTTGATTGATATGTGGCAAGAAGCTTTTGGCGGTCCAAGTGGAAGGTTTCCTCAGTTCTATGCAGCATATAATGAGCTAAGGTCTGCTGGAGTTGAATTTCCACCACGGGAAGAAAATAGGGCACCACTGTTCACTCCTCCGCAAACCCAACCAATTGAGTATCCTACTGCAGAATATGATGATGCTGCAATTCAAGCTTCTCTTCAGTCGGATGCTTCTGGCCTTAGCCTGCCAGAGATTCAGAATGCTCAAGGACTAGCAGATGTATTGATGGAAATGCTTGGTGCTTCGGATCCGAAAAATCCTGAGGCTCTGAAGCAAGAAGTAATCGTTGACCTTGTTGATCAGTGCCGTTCTTACCAAAAGCGGGTCATGCTTCTTGTGAACAATACTGCGGATGAGCAACTTTTGAGTCAGGGATTGGCACTGAATGACAGCCTGCAACGTGTACTTGGCCGACACGATGATATACAAAAAGGAACTCTTAATTCAGGTGCTACTGCAAGAGGAACAGAAACCTCTGTTCTTCCACTCGTCAATGTAAACCATGAGGATGATGAGGCAGAAGACGACTTTGATCAGTTAGCTCATAGGTCAAGAGATACTCATGCACTGGGTCGTAAACCAGCCAATGACAAGGCAGAAAGTGTGAGAGTAAATCAAATTCTTCCCCCACCACCGGCATCAAGGAAGCCCGTCGCCTCTGATGCTGGCATGATGGACTATCTTAGTGGCGACGCGTACAAAGTAGAAAACTCAGAACCAACCCCATTTTCGGTTCCATCCCATTCTAGCCCTCATCCTTCTTCGCCGCCCCCTTCTCAGGGCATGAGTACGTCACCACCGATTTTTACCAGACAACCTGTGTATGATGAACCATCGCCCCTGGGCAAATCTGCAGATCAACTTCCTCCGGCTCCATGGGACACCCAATCTACTGGTGGTCTTCCACCCCCACCGTCGAGGTATAACCAGAGACAACAGTTTTTTGAGCAGCAAGGTGCATCTCATTCAAGCAGCGGATCCAATTCCTCTTATGATAGCTTTGTGGCACAAACGCAGAATCTGTCTTTGAATTCATCTACCCCAACCAAACAAGAGAAGCCAGAAGATGCCCTTTTCAAAGATCTGGTCGACTTTGCTAAATCGAAGACTTCTTCGGCTTCGAAACCCAATAGGTCATATTGA 1773 0.4512 MFKAKVKLTNQKGQTVCKTRKGSGSPLGTVRKQKVTNPQIGSSFFKYLSSTSRSLLILVLLQLDPPLIFRNTGFNLLKIKRRHWSQRDMANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLSSKNPKIQLLALFALETLSKNCGENLFQQIIERDILHEMVKIVKKKPDLNIREKILILIDMWQEAFGGPSGRFPQFYAAYNELRSAGVEFPPREENRAPLFTPPQTQPIEYPTAEYDDAAIQASLQSDASGLSLPEIQNAQGLADVLMEMLGASDPKNPEALKQEVIVDLVDQCRSYQKRVMLLVNNTADEQLLSQGLALNDSLQRVLGRHDDIQKGTLNSGATARGTETSVLPLVNVNHEDDEAEDDFDQLAHRSRDTHALGRKPANDKAESVRVNQILPPPPASRKPVASDAGMMDYLSGDAYKVENSEPTPFSVPSHSSPHPSSPPPSQGMSTSPPIFTRQPVYDEPSPLGKSADQLPPAPWDTQSTGGLPPPPSRYNQRQQFFEQQGASHSSSGSNSSYDSFVAQTQNLSLNSSTPTKQEKPEDALFKDLVDFAKSKTSSASKPNRSY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0260 590 MobiDBLite consensus disorder prediction 456 473 - -
Lele01g0260 590 FunFam TOM1-like protein 2 92 239 - -
Lele01g0260 590 Gene3D - 85 246 IPR008942 -
Lele01g0260 590 SMART VHS_2 93 225 IPR002014 GO:0035091|GO:0043130
Lele01g0260 590 CDD GAT_GGA_like_plant 274 352 - -
Lele01g0260 590 Pfam VHS domain 97 218 IPR002014 GO:0035091|GO:0043130
Lele01g0260 590 MobiDBLite consensus disorder prediction 396 430 - -
Lele01g0260 590 CDD VHS 98 223 - -
Lele01g0260 590 Pfam GAT domain 281 355 IPR004152 GO:0035091|GO:0043130
Lele01g0260 590 ProSiteProfiles VHS domain profile. 100 229 IPR002014 GO:0035091|GO:0043130
Lele01g0260 590 SUPERFAMILY ENTH/VHS domain 95 230 IPR008942 -
Lele01g0260 590 SUPERFAMILY GAT-like domain 233 355 - -
Lele01g0260 590 PANTHER TOM1-LIKE PROTEIN 89 585 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele01g0260 590 MobiDBLite consensus disorder prediction 500 546 - -
Lele01g0260 590 MobiDBLite consensus disorder prediction 444 546 - -
Lele01g0260 590 ProSiteProfiles GAT domain profile. 266 354 IPR004152 GO:0035091|GO:0043130
Lele01g0260 590 Gene3D - 263 361 IPR038425 -
Lele01g0260 590 PIRSF TOM1 83 589 IPR014645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0260 Lele-ChrLele01 1479284 1483570 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0234 26 1357035 1359297 Lele01g0260 01 1479284 1483570 CCT
Lele27g1863 27 23424155 23426549 Lele01g0260 01 1479284 1483570 CCT
Lele28g0243 28 1415205 1417468 Lele01g0260 01 1479284 1483570 CCT
Lele01g0260 01 1479284 1483570 Lele26g0232 26 1339398 1349001 CCT
Lele01g0260 01 1479284 1483570 Lele27g1867 27 23436106 23437104 CCT
Lele01g0260 01 1479284 1483570 Lele03g0266 03 1457959 1462754 hybridization
Lele01g0260 01 1479284 1483570 Lele04g0257 04 1521700 1524922 hybridization