Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0266 ATGGACTGGCCACGTCTTGGGCCAAGTCCGGTCATGTATATTAGTATTGATATTGGACAAGAAAGGGAAGCGGAAGTCCTCTCAGAACTGTCGAAAGCAAAAAGTCACGAACCCCCCAATCGGCTCTTCCTTTTTCTAATACCTCTCGTCGACATCCCGATCTCTTCTGATTCTAGTACTGCTCCAATTGGATCCTCCTCTTATTTTTCGAAACACAGGACTTTGGTTATTAAAAGACGTCATTGGAGCCAGAGAGACATGGCTAATAATGCAGCAGCCTGTGCAGAGAGGGCAACCAGTGACATGCTGATTGGCCCGGACTGGGCAATTAACATAGAGTTGTGTGATATCATTAATATGGACCCCAGGCAAGCAAAGGACGCATTAAAGATACTCAAGAAGCGTTTGAGCAGTAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGCATTGGAGACTCTCAGCAAAAATTGTGGTGAAAATTTGTTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCTGACTTAAATGTCAGGGAAAAGATACTGATTTTGATTGATATGTGGCAAGAAGCTTTTGGCGGTCCGAGTGGAAGGTTTCCCCAGTTCTATGCAGCATATAATGAGCTAAGGTCTGCTGGAGTTGAATTTCCACCACGGGAAGAAAATAGGGCACCACTGTTCACTCCTCCTCAAACCCAACCAATTGAGTATCCTACTGCAGAATATGATGATGCTGCAATTCAAGCTTCTCTTCAGTCGGATGCTTCTGACCTTAGCCTGCCAGAGATTCAGAATGCTCAAGGACTAGCTGATGTATTGATGGAAATTCTTAGTGCTTCGGATCCAAAAAATCCTGAGTCTCTGAAGCAAGAAGTAATCGTTGACCTTGTTGATCAGTGCCGTTCTTACCAAAAGCGGGTCATGCTTCTTGTGAACAATACTACGGATGAGCAACTTTTGAGTCAGGGATTGGCACTGAATGACGGCCTGCAACGTGTACTTGGCCGACACGATGATATCCAAAAAGGAACTCTTAATTCAGGTGCGACTGCAAGAGGAACAGAAACCTCTGTTCTTCCACTCGTCAATGTAAACCATGAGGATGATGAGTCAGAAGACGACTTTGATCAGTTAGCTCGTAGGTCAAGAGATACTCATGCACTGGGTCGTAAACCAGCCAATGACAAGGCAGAAAGTGTGAGAGTAAATCAAATTCTTCCCCCACCACCGGCATCAAGGAAGCCCGTCGCCTCTGATGCTGGCATGATGGACTATCTTAGTGGCGACGCATACAAAGTAGAAAACTCAGAACCAACCCCATTTTCGGTTCCATCCCATTCTAGCCCTCATCCTTCTTCGCCCCCTTCTCATGGCATGAGTACGTCACCACCGACTTTTACCAGACAACCTGTGTATGATGAACCATCGCCCCTGGGCAAATCTGCAGATCAGCTTCCTCCGGCTCCATGGGACACCCAATCTACTGGTGGTCTTCCACCCCCACCGTCGAGGTATAACCAGAGACAACAGTTTTTTGAGCAGCAAGGTGGATCTCATTCAAGCAGCGGATCCAATTCCTCTTATGATAGCTTGGTAGGACAAACGCAGAATCTGTCTTTGAATTCATCTACCCCAACCAAACAAGAGAAGCCAGAAGATGCCCTTTTCAAAGATCTGGTCGACTTTGCTAAATCGAAGACTTCTTCGTCTTCGAAACCCAATAGGTCATATTGA 1764 0.4558 MDWPRLGPSPVMYISIDIGQEREAEVLSELSKAKSHEPPNRLFLFLIPLVDIPISSDSSTAPIGSSSYFSKHRTLVIKRRHWSQRDMANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLSSKNPKIQLLALFALETLSKNCGENLFQQIIERDILHEMVKIVKKKPDLNVREKILILIDMWQEAFGGPSGRFPQFYAAYNELRSAGVEFPPREENRAPLFTPPQTQPIEYPTAEYDDAAIQASLQSDASDLSLPEIQNAQGLADVLMEILSASDPKNPESLKQEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLSQGLALNDGLQRVLGRHDDIQKGTLNSGATARGTETSVLPLVNVNHEDDESEDDFDQLARRSRDTHALGRKPANDKAESVRVNQILPPPPASRKPVASDAGMMDYLSGDAYKVENSEPTPFSVPSHSSPHPSSPPSHGMSTSPPTFTRQPVYDEPSPLGKSADQLPPAPWDTQSTGGLPPPPSRYNQRQQFFEQQGGSHSSSGSNSSYDSLVGQTQNLSLNSSTPTKQEKPEDALFKDLVDFAKSKTSSSSKPNRSY 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0266 587 MobiDBLite consensus disorder prediction 497 559 - -
Lele03g0266 587 Gene3D - 261 359 IPR038425 -
Lele03g0266 587 SMART VHS_2 91 223 IPR002014 GO:0035091|GO:0043130
Lele03g0266 587 Pfam VHS domain 95 216 IPR002014 GO:0035091|GO:0043130
Lele03g0266 587 PIRSF TOM1 81 586 IPR014645 -
Lele03g0266 587 SUPERFAMILY GAT-like domain 231 353 - -
Lele03g0266 587 SUPERFAMILY ENTH/VHS domain 93 228 IPR008942 -
Lele03g0266 587 MobiDBLite consensus disorder prediction 462 479 - -
Lele03g0266 587 CDD GAT_GGA_like_plant 272 350 - -
Lele03g0266 587 Pfam GAT domain 279 353 IPR004152 GO:0035091|GO:0043130
Lele03g0266 587 Gene3D - 83 244 IPR008942 -
Lele03g0266 587 PANTHER TOM1-LIKE PROTEIN 87 583 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele03g0266 587 ProSiteProfiles GAT domain profile. 264 352 IPR004152 GO:0035091|GO:0043130
Lele03g0266 587 ProSiteProfiles VHS domain profile. 98 227 IPR002014 GO:0035091|GO:0043130
Lele03g0266 587 MobiDBLite consensus disorder prediction 394 428 - -
Lele03g0266 587 CDD VHS 96 221 - -
Lele03g0266 587 FunFam TOM1-like protein 2 90 237 - -
Lele03g0266 587 MobiDBLite consensus disorder prediction 442 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0266 Lele-ChrLele03 1457959 1462754 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0234 26 1357035 1359297 Lele03g0266 03 1457959 1462754 CCT
Lele27g1863 27 23424155 23426549 Lele03g0266 03 1457959 1462754 CCT
Lele28g0243 28 1415205 1417468 Lele03g0266 03 1457959 1462754 CCT
Lele03g0266 03 1457959 1462754 Lele26g0232 26 1339398 1349001 CCT
Lele03g0266 03 1457959 1462754 Lele27g1867 27 23436106 23437104 CCT
Lele01g0260 01 1479284 1483570 Lele03g0266 03 1457959 1462754 hybridization
Lele02g0249 02 1411265 1414463 Lele03g0266 03 1457959 1462754 hybridization