Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0257 ATGGCTAATAATGCAGCAGCCTGTGCAGAGAGGGCAACCAGTGACATGCTAATTGGACCGGACTGGGCAATTAACATTGAGTTGTGTGATATTATTAATATGGATCCCAGGCAAGCAAAGGATGCATTAAAGATACTCAAGAAGCGTTTGAGCAGTAAAAATCCCAAAATACAACTTCTGGCTCTTTTTGCGTTGGAGACTCTCAGCAAAAATTGTGGTGAAGATTTGTTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTGAAGATAGTGAAGAAGAAGCCTGACTTAAATGTCAGGGAAAAGATACTTATTTTGATTGATATGTGGCAAGAAGCTTTTGGCGGTCCAAGTGGAAGGTTTCCCCAGTTCTCTGCGGCATATAATGAACTAAGGTCTGCTGGAGTTGAATTTCCACCACGGGAAGAGAATAGGGCACCACTGTTAACTCCTCCTCAAACCCAGCCAATTGAATCTCCTAGTGCGGAATATGATGACGCTGCAATTCAGGCTTCTCTTCAGTCGGATGCTTCTGGCCTTAGCCTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGTGCTTTGGATCCAAAAAATCCTGAGGCTGTGAAGCAAGAAGTAATTGTTGACCTTGTTGATCGGTGCCGTTCTTACCAAAAGCGGGTCATGCTTCTTGTGAACAATACTGCGGATGAGCAACTTTTGAGTCAGGGATTGGCACTGAATGACAGCCTGCAATGTGTACTTGGCCGACACGATGATATCCAAAAAGGAACTCTTAATTCAGGTGCGACTGCAAGAGGAACAGAAACTGGTGTTCTTCCACTCGTCAATATAAACCATGAGGATGATGAGTCGGAAGACGACTTTGACCAGTTAGCTCATAGGTCAAGAGATACTCATGCCCTGGGTCGTAAACCAGCCAATGACAAGGCAGAAAGTGTGAGAATAAATCAAATTCTTCCCCCACCCCCAGCATCAAGGAAGCCTGTCGCCTCTGATTCTGGCATGATTGACTATCTTAGTGGCGACGCGTACAAAGTAGAAAACTCAGAACCAACCCCTTTTTCGGTTCCATCCCATTCAAGCCCTCATCCTTCCTCACCCCCTTCTCATGGCATTAGTACTTCACCGCCGACTTTTACCAGACAACCTGTGTATGATGAACCATCGCCCCAGAGCAAATCTGCAGATCAACTTCCTCCAGCTCCCTGGGACACCCAATCTACTGGTCTTCCACCTCCTCCGTCGAGGTATAGCCAGAGACAACAATTTTTTGACCAGCAAGGTACATCTCATTCGAGTAGCGGATCCAATTCCTCTTATGATAGCTTGGTGGGACAAACGCAGAATTTGTCTTTGAATTCATCTACCTCAACCAAAAAAGAGAAGCCAGAAGATGCGCTTTTCAAAGATCTGGTTGACTTTGCTAAATCGAAGACTTCTTCGTCTTCGAAACCCAATAGGTCATATTGA 1503 0.4491 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLSSKNPKIQLLALFALETLSKNCGEDLFQQIIERDILHEMVKIVKKKPDLNVREKILILIDMWQEAFGGPSGRFPQFSAAYNELRSAGVEFPPREENRAPLLTPPQTQPIESPSAEYDDAAIQASLQSDASGLSLLEIQNAQGLADVLMEMLSALDPKNPEAVKQEVIVDLVDRCRSYQKRVMLLVNNTADEQLLSQGLALNDSLQCVLGRHDDIQKGTLNSGATARGTETGVLPLVNINHEDDESEDDFDQLAHRSRDTHALGRKPANDKAESVRINQILPPPPASRKPVASDSGMIDYLSGDAYKVENSEPTPFSVPSHSSPHPSSPPSHGISTSPPTFTRQPVYDEPSPQSKSADQLPPAPWDTQSTGLPPPPSRYSQRQQFFDQQGTSHSSSGSNSSYDSLVGQTQNLSLNSSTSTKKEKPEDALFKDLVDFAKSKTSSSSKPNRSY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0257 500 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Lele04g0257 500 Gene3D - 176 273 IPR038425 -
Lele04g0257 500 PIRSF TOM1 1 499 IPR014645 -
Lele04g0257 500 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Lele04g0257 500 MobiDBLite consensus disorder prediction 307 321 - -
Lele04g0257 500 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Lele04g0257 500 Pfam VHS domain 9 131 IPR002014 GO:0035091|GO:0043130
Lele04g0257 500 CDD VHS 10 135 - -
Lele04g0257 500 Gene3D - 2 158 IPR008942 -
Lele04g0257 500 PANTHER TOM1-LIKE PROTEIN 1 496 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lele04g0257 500 SUPERFAMILY GAT-like domain 145 267 - -
Lele04g0257 500 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Lele04g0257 500 MobiDBLite consensus disorder prediction 307 345 - -
Lele04g0257 500 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Lele04g0257 500 MobiDBLite consensus disorder prediction 376 468 - -
Lele04g0257 500 CDD GAT_GGA_like_plant 186 264 - -
Lele04g0257 500 MobiDBLite consensus disorder prediction 357 477 - -
Lele04g0257 500 FunFam TOM1-like protein 2 4 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0257 Lele-ChrLele04 1521700 1524922 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0234 26 1357035 1359297 Lele04g0257 04 1521700 1524922 CCT
Lele27g1863 27 23424155 23426549 Lele04g0257 04 1521700 1524922 CCT
Lele28g0243 28 1415205 1417468 Lele04g0257 04 1521700 1524922 CCT
Lele04g0257 04 1521700 1524922 Lele26g0232 26 1339398 1349001 CCT
Lele04g0257 04 1521700 1524922 Lele27g1867 27 23436106 23437104 CCT
Lele01g0260 01 1479284 1483570 Lele04g0257 04 1521700 1524922 hybridization
Lele02g0249 02 1411265 1414463 Lele04g0257 04 1521700 1524922 hybridization