Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2011 ATGCTTGTCTTTGTTGGAGTATCGTGGGATCTGAACTGGTTCCTAAGATTCATATTCTCGGTGTTAGTTGTGGCAATTGGGTTACACATTTTGGTCAGAAAAACCGCTTCTAAATACTTCGAAGTAGAAGCCAATTTCGAAGGAGACAATTCCATCAATTCAACATCAACCATGTCTGGAGTTATGGACTTATGTGCTTTTTGTCGGAAACAAGGTTCTAAGCAGTGTTCTCGTTGCAAAGCCGTACGATATTGCTCACAAGAATGTCAACTGTCACATTGGAGATCCGGGCACAAGGAAAGTTGCACGGTTTCGACTCAAAGTGAGGTGACTAAACGGGGGGCTTTGATAGCTGGCGGTAAAAAGCCTTCAATTGCATTGATACCTAGTAAAGGAAGTGGAACTTCTAGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTGAAACTTTTTAACTGGGCCAAGCCAGGACCTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCGAATGTGGTTCTTCAGTGTCTTTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAAAAAGGCCACCGCAGAGAATGTGGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAGAACAAGGCTAAGTTCACAATCGTTTTCTCCCATGAATATTCTCTCTCGTTTGCCGAATATTGGCGGCACTCTTGGCTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTGGATGAATTTGGTGGAGAAAAAGTTGTCCCTCCTAACCTTCAGGAAACAACCCTTATTCAACACATTTTCGGTGGCTGTCTTCAATCCGAGGTGATATGCACGAAATGTGACCAGAAGTCAAGTCAGTATGAAAGTATGATGGACTTGACTGTTGAAATCCATGGAGATGCTGCCTCCTTGGAAGAATGCCTAGACCAGTTTACTGCCAAAGAGTGGCTTCACGGGGAAAATATGTATAAATGTGATGGGTGCAAGGACTATGTCAAGGCATGGAAACGTCTTACTGTGAAACGTGCTCCAAATATTCTTACAATTGCCTTTAAAAGATTTCAGAGTGGGAGGTTTGGTAAACTTAACAAGAGAGTAGCCTTCCCCGAGACTTTAAATCTTAGCCCTTACACGAGTGAAGCTGGTGATGGATCTGATATCTATAAGCTATATGCTGTTGTAGTCCATCTTGATATGCTAAATGCGTCATTTTTTGGTCATTACATTTGCTACATCAAAGATTTCCAAGGAAATTGGTATAGGGTTGATGATTGGAAGGTTACAAGGGTGGAACTGGAGGAGGTACTTTCCCAGGGAGCATATATGCTGTTGTATAGCAGGTGTACTCCCCGACCATCAAACCTCCAAATTCAAACTACTGAAACTTCGAGGAAAGCAGAAATGCAAACAGTCAAAATGGGAGTGGAGCCTGAAACAAGCAAACAAGCTGAATGCGTCTCAATTGTGGAGTCTGTGACTTGTAGTAGAGGTGAGGTTTTGCCATCGGATATTAGTCCAGAGTTGGTTTCTGGACATGAATACCAGCCTTCCACCATAATCGACTCCGGTGCCAAATGCGAGCATTCTGATGATGTGGACATGATTGATAAGTCAACTAATCCCGGAAATGAGATCTCTTGCAGTCCTGTTGGATCATCTTCCATACCCATTTCTCAAGCTGTCGAAGATTTCGGGGATGTAGATATGAGCATATCTCCTGAAGAAACTCCAGGCAACACAGAAGAGCAACACGATATTGCTATCTCCACTCTTCCGGGTTTGCCAAATGACATTTCCTGCTCTGATAAGCATTCTTCTGTTTCAACAGATTGTCCAAAAATGGGAGATGCAGAACATATAGATGTGGCTAAATGCAAGTCATTAACATCTAAAGATGGCGCATATTACGGCAATGGGTATGTTAGTGCAAACAAATCTGCTGTTTGA 2019 0.425 MLVFVGVSWDLNWFLRFIFSVLVVAIGLHILVRKTASKYFEVEANFEGDNSINSTSTMSGVMDLCAFCRKQGSKQCSRCKAVRYCSQECQLSHWRSGHKESCTVSTQSEVTKRGALIAGGKKPSIALIPSKGSGTSRPIKQAKDVLFPYDEFVKLFNWAKPGPPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECGCNDWCFLCEFETHVERTRLSSQSFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKVVPPNLQETTLIQHIFGGCLQSEVICTKCDQKSSQYESMMDLTVEIHGDAASLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVKRAPNILTIAFKRFQSGRFGKLNKRVAFPETLNLSPYTSEAGDGSDIYKLYAVVVHLDMLNASFFGHYICYIKDFQGNWYRVDDWKVTRVELEEVLSQGAYMLLYSRCTPRPSNLQIQTTETSRKAEMQTVKMGVEPETSKQAECVSIVESVTCSRGEVLPSDISPELVSGHEYQPSTIIDSGAKCEHSDDVDMIDKSTNPGNEISCSPVGSSSIPISQAVEDFGDVDMSISPEETPGNTEEQHDIAISTLPGLPNDISCSDKHSSVSTDCPKMGDAEHIDVAKCKSLTSKDGAYYGNGYVSANKSAV* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2011 672 SUPERFAMILY HIT/MYND zinc finger-like 61 105 - -
Lan6g2011 672 Pfam MYND finger 65 102 IPR002893 -
Lan6g2011 672 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 560 - -
Lan6g2011 672 ProSiteProfiles Zinc finger MYND-type profile. 65 102 IPR002893 -
Lan6g2011 672 SUPERFAMILY Cysteine proteinases 161 476 IPR038765 -
Lan6g2011 672 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 166 472 IPR028889 -
Lan6g2011 672 Gene3D - 51 108 - -
Lan6g2011 672 Pfam Ubiquitin carboxyl-terminal hydrolase 166 469 IPR001394 GO:0004843|GO:0016579
Lan6g2011 672 ProSitePatterns Zinc finger MYND-type signature. 65 102 IPR002893 -
Lan6g2011 672 Gene3D Cysteine proteinases 159 484 - -
Lan6g2011 672 CDD Peptidase_C19E 165 470 - -
Lan6g2011 672 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 167 182 IPR018200 GO:0004843|GO:0006511
Lan6g2011 672 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2011 Lan-Chr6 30896058 30902776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2011 5 478 Miscellaneous Gene Families AT4G31670 63.125 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2011 K11855 - gmx:100799652 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0065 10 362909 370010 Lan6g2011 6 30896058 30902776 LSH
Lan18g0165 18 1373869 1379142 Lan6g2011 6 30896058 30902776 LSH
Lan17g0100 17 555918 560526 Lan6g2011 6 30896058 30902776 PCT
Lan18g1124 18 16204995 16209706 Lan6g2011 6 30896058 30902776 PCT
Lan6g0074 6 501054 506435 Lan6g2011 6 30896058 30902776 PCT