Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0165 ATGTCACCGAAAACTGTTTTGGTTACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTCCTTCAACTCCTCCTCGGCGGTTACAACGCCGTCGTCGTCGATAACCTTGACAATTCTTCTGAAGTTGCTATCCAGAGAGTCAAGGAACTTGCCGGAGAATTCAAAGCCAATCTTTCCTTTTATAAGTTAGACCTTAGGGACAGAGCTGCACTTGAGAAAGTTTTTGCTTCTACAAAGTTTGATGCTGTGATACATTTTGCTGGGCTGAAAGCAGTTGGTGAAAGTGTGCAGAAACCACTTCTCTACTATGACAACAACTTGATTGGTACAATCATTCTCTTTGAAGTAATGGCTGCTCATGGATGCAAAAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGTTGGCCGAAGGAGGTTCCATGTACCGAAGAGTTCCCTTTGTCGGCAGCAAACCCATATGGACGAACCAAGCTTATCATTGAAGAAATTTGTCGCGACATCTACCATGGAGAATCGGAATGGAAAATAATATTGTTGAGATATTTCAACCCTGTTGGTGCACATCCTAGTGGTTCAATTGGCGAGGATCCTCGAGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGCCCGGCACTGACAATTTTCGGAACTGATTATAATACAAGTGATGGCACTGGAGTTCGAGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTAAATAAACTAGATGATCCTAAAATAGGATGCGAGGTTTATAACTTGGGAACAGGAAAGGGAACTTCAGTTTTGGAGATGGTAAAAGCTTTTGAGCAGGCCTCTGGAAAGAAAATTCGACTAGTGACGGCTGGCCGGAGACCTGGAGATGCTGAAATTGTTTATGCATCAACAGAGAAAGCAGCAAGAGAGCTTAATTGGAAGGCAAAATATGGCATTGATGAGATGTGCAGGGATCAGTGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTGCAGAAGACTCAACCAATTAA 1053 0.4378 MSPKTVLVTGGAGYIGSHTVLQLLLGGYNAVVVDNLDNSSEVAIQRVKELAGEFKANLSFYKLDLRDRAALEKVFASTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIILFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYHGESEWKIILLRYFNPVGAHPSGSIGEDPRGIPNNLMPFVQQVAVGRRPALTIFGTDYNTSDGTGVRDYIHVVDLADGHIAALNKLDDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIRLVTAGRRPGDAEIVYASTEKAARELNWKAKYGIDEMCRDQWNWASKNPYGYGSAEDSTN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0165 350 Gene3D - 194 335 - -
Lan18g0165 350 Gene3D - 6 275 - -
Lan18g0165 350 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Lan18g0165 350 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Lan18g0165 350 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Lan18g0165 350 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Lan18g0165 350 PRINTS Nucleotide sugar epimerase signature 301 318 - -
Lan18g0165 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
Lan18g0165 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Lan18g0165 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 4 348 - -
Lan18g0165 350 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
Lan18g0165 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0165 Lan-Chr18 1373869 1379142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0165 5 319 Miscellaneous Gene Families AT4G00110 28.182 9.65e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0165 K01784 - gmx:100812565 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0165 18 1373869 1379142 Lan6g2011 6 30896058 30902776 LSH
Lan17g0100 17 555918 560526 Lan18g0165 18 1373869 1379142 PCT
Lan18g1124 18 16204995 16209706 Lan18g0165 18 1373869 1379142 PCT
Lan6g0074 6 501054 506435 Lan18g0165 18 1373869 1379142 PCT