Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0074 ATGTTCTCTGCCATTACCATTAACTTTACTACTAATACTTCCTCTTATTATATTAATTCACCGCTTTCAAATCCATCATCACTATCAAATTCAATTTCATCTCAAAACGGTTTCATGATTAACAAAACTGTTCTGGTTACCGGTGGAGCCGGTTACATCGGTACTCACACCGTTCTTCACCTTTTGCTCGCTGGTTTCAAAACAGTTGTTATCGATAACCTTCACAATTCTTCTCAAATTGCCATCCTCAGAGTCAAAAAACTCGCTGGAGATTTCGGGAATAACCTTTCCTTTCATAAGGCAGACCTACGGGACAGAGATGCACTTGAGCAAATTTTTGTTTCTACAAAGTTTGATGCTGTCATACATTTTGCTGGATTGAAAGCAGTGGGTGAAAGTGTGCAGAAGCCATTGCTCTACTACAACAACAACTTGAGTGGGGCAATCACTCTCTTGGAAGTGATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAGCGAATCCATATGGACGAACTAAGCTTATAATCGAAGAAATTTGCCGTGATGTCTGCAGTGCAGAGCCAGATTGGAAAATAATCTTGTTGAGATTCTTCAACCCAGTAGGTGCACATCCTAGTGGTTATATTGGGGAGGATCCTCAAGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGAAGACGACCTGCACTGACTGTTTTCGGAAATGATTATAATACAATCGACGGCACTGGGGTTCGCGATTACATACATGTTGTTGATTTAGCAGATGGCCACGTTGCTGCATTGCTTAAATTAGATGAATCTAATATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACAAGCCTCTGGAAAGAAAATTCCACTTGTGATTGCTGGCCGGAGACCTGGTGATGCTGAAATTGTATATGCATCAATAGAGAAAGCAGGAAGAGAACTTAAGTGGAAGGCAAAATATGGCATTGATGAAATGTGCCGTGATCAATGGAATTGGGCCAGCAAAAACCCTCATGGCTATGGATCTCAGGAGGATTCTACGGATTAA 1167 0.4182 MFSAITINFTTNTSSYYINSPLSNPSSLSNSISSQNGFMINKTVLVTGGAGYIGTHTVLHLLLAGFKTVVIDNLHNSSQIAILRVKKLAGDFGNNLSFHKADLRDRDALEQIFVSTKFDAVIHFAGLKAVGESVQKPLLYYNNNLSGAITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEEICRDVCSAEPDWKIILLRFFNPVGAHPSGYIGEDPQGIPNNLMPFVQQVAVGRRPALTVFGNDYNTIDGTGVRDYIHVVDLADGHVAALLKLDESNIGCEVYNLGTGKGTSVLEMVRAFEQASGKKIPLVIAGRRPGDAEIVYASIEKAGRELKWKAKYGIDEMCRDQWNWASKNPHGYGSQEDSTD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0074 388 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 39 384 - -
Lan6g0074 388 CDD UDP_G4E_1_SDR_e 43 372 IPR005886 GO:0003978|GO:0006012
Lan6g0074 388 Pfam GDP-mannose 4,6 dehydratase 45 368 IPR016040 -
Lan6g0074 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 380 IPR036291 -
Lan6g0074 388 TIGRFAM galE: UDP-glucose 4-epimerase GalE 44 379 IPR005886 GO:0003978|GO:0006012
Lan6g0074 388 PANTHER UDP-GLUCOSE 4-EPIMERASE 39 384 - -
Lan6g0074 388 Gene3D - 44 313 - -
Lan6g0074 388 Gene3D - 232 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0074 Lan-Chr6 501054 506435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0074 29 357 Miscellaneous Gene Families AT4G00110 26.531 2.71e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0074 K01784 - gmx:100792137 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0100 17 555918 560526 Lan6g0074 6 501054 506435 LSH
Lan18g1124 18 16204995 16209706 Lan6g0074 6 501054 506435 LSH
Lan6g0074 6 501054 506435 Lan18g0165 18 1373869 1379142 PCT
Lan6g0074 6 501054 506435 Lan6g2011 6 30896058 30902776 PCT