Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0100 ATGGCTTCTAGTGTCACTATTAACATTACTAATACCTCCTCTTATATAAATCCACCGCCTCATTTTATTTCACATGCTAAGGTTTCAAATCCATCATCACTACCAAATTCTTCATCATCCTCTGTCGTTTCATCTCAAAACGGTTTTATGATTTCAAAAACTGTTTTGGTTACCGGCGGAGCCGGTTACATTGGGACCCACACCGTTCTTCAACTATTACTCGCTGGTTTCAAAACTGTGGTTGTGGATAACTTTGATAATTCTTCTGATGTTGCCATTCGAAGAGTGAAGGAACTCGCTGGAGAATTTGGGAATAACCTTTCGTTTCATAAGGCAGACCTCCGGGACAGAGATGCACTTGAGCAAATTTTTGTTTCTACAAAGTTTGATGCTGTGATACATTTTGCTGGATTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCATTGCTCTACTACAACAACAACTTGAATGGGACAATCACTCTCTTGGAAGTGATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAGCGAATCCATATGGACGAACTAAGCTTATAATTGAAGAAATTTGCCGTGATGTCTACAATTCAGAGCAAGATTGGAAAATAATCTTGTTGAGATACTTCAACCCAGTCGGCGCACATCCTAGTGGTTATATTGGGGAGGACCCTCGAGGAATTCCAAACAACCTCATGCCGTTTGTTCAGCAAGTAGCAGTTGGAAGACGACCCACACTGACCGTTTTTGGAAATGATTATAATACGATCGATGGCACTGGGGTTCGCGATTTCATTCATGTTGTTGATTTAGCATATGGGCACATTGCTGCATTGCTTAAATTAGATGAATCTAATATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAACAGGCCTCGGGAAAGAAAATTCCACTTTTGATGGCTGGCCGGAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGAGAAAGCAGAAAGAGAACTTAACTGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGATCTGAGGAGGATTCTACAGATTGA 1200 0.4183 MASSVTINITNTSSYINPPPHFISHAKVSNPSSLPNSSSSSVVSSQNGFMISKTVLVTGGAGYIGTHTVLQLLLAGFKTVVVDNFDNSSDVAIRRVKELAGEFGNNLSFHKADLRDRDALEQIFVSTKFDAVIHFAGLKAVGESVQKPLLYYNNNLNGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEEICRDVYNSEQDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPTLTVFGNDYNTIDGTGVRDFIHVVDLAYGHIAALLKLDESNIGCEVYNLGTGKGTSVLEMVRAFEQASGKKIPLLMAGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGSEEDSTD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0100 399 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 50 395 - -
Lan17g0100 399 Gene3D - 55 324 - -
Lan17g0100 399 TIGRFAM galE: UDP-glucose 4-epimerase GalE 55 389 IPR005886 GO:0003978|GO:0006012
Lan17g0100 399 PANTHER UDP-GLUCOSE 4-EPIMERASE 50 395 - -
Lan17g0100 399 Pfam GDP-mannose 4,6 dehydratase 56 379 IPR016040 -
Lan17g0100 399 Gene3D - 243 384 - -
Lan17g0100 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 50 390 IPR036291 -
Lan17g0100 399 CDD UDP_G4E_1_SDR_e 54 383 IPR005886 GO:0003978|GO:0006012
Lan17g0100 399 PRINTS Nucleotide sugar epimerase signature 81 97 - -
Lan17g0100 399 PRINTS Nucleotide sugar epimerase signature 285 300 - -
Lan17g0100 399 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Lan17g0100 399 PRINTS Nucleotide sugar epimerase signature 350 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0100 Lan-Chr17 555918 560526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0100 39 368 Miscellaneous Gene Families AT4G00110 27.907 5.66e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0100 K01784 - gmx:100792137 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0100 17 555918 560526 Lan18g1124 18 16204995 16209706 LSH
Lan17g0100 17 555918 560526 Lan6g0074 6 501054 506435 LSH
Lan17g0100 17 555918 560526 Lan18g0165 18 1373869 1379142 PCT
Lan17g0100 17 555918 560526 Lan6g2011 6 30896058 30902776 PCT