Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1124 ATGGCCTCTCGCATAAGCATTATTAATAACATTACTAATACTAATAAGCATGCTTCAATTTATGTAAATTCGTCACCTCCTATTCCTTTTATTTCAAATCTATCATTACCAAATTCTTCATTTCAAAACCCTTTCATGATTTCGAAAACGGTTTTGGTTACTGGCGGAGCCGGTTACATTGGTACTCACACCGTTCTTCATCTTCTTCTCGCTGGTTTCAAAACCGTTGTTGTTGATAATCTCGATAATTCTTCTCATCTTGCTATTCTCAGAGTTAAGGAACTTGCTGGAGAATTTCGAAATAACCTTTCCTTTCATAACGCAGATCTCCGGGATAGAGACGCACTCGAGCAAATTTTTGTTTCTACAAAGTTTGACGCTGTAATACATTTTGCTGGATTGAAAGCAGTGGGTGAAAGTGTGAAGAAACCATTGCTTTACTACAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTGATGGCTGCCCACGGATGCAAGAAGCTTGTATTCTCATCTTCAGCCACTGTATACGGTTGGCCAAAGAAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAGCTAATCCATATGGACGATCTAAGCTTATCATTGAAGAAATTTGCCGCGATGTATACAATGCAGAGCAAGATTGGAAGATAATCTTGTTGAGATACTTCAACCCCGTGGGTGCACATCCTAGTGGTTATATTGGGGAGGATCCTCGAGGAGTTCCAAACAACCTCATGCCGTTTGTCCAGCAAGTAGCAGTTGAAAGACGACCTGCACTGACCATTTTCGGAAATGATTATAATACAATTGATGGCACTGGGGTTCGCGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAATTAGATGAATCCGATATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGATGGTTAAAGCTTTTGAACTGGCCTCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGGAGACCTGGTGATGCTGAAATTGTCTATGCATCAACAGAAAAAGCAGAAAGAGAACTTAACTGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAACTGGGCTAGCAAAAACCCTTATGGCTATGGATCTCAGAAGGATTCAACGGATTGA 1188 0.4108 MASRISIINNITNTNKHASIYVNSSPPIPFISNLSLPNSSFQNPFMISKTVLVTGGAGYIGTHTVLHLLLAGFKTVVVDNLDNSSHLAILRVKELAGEFRNNLSFHNADLRDRDALEQIFVSTKFDAVIHFAGLKAVGESVKKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKKVPCTEEFPLSAANPYGRSKLIIEEICRDVYNAEQDWKIILLRYFNPVGAHPSGYIGEDPRGVPNNLMPFVQQVAVERRPALTIFGNDYNTIDGTGVRDYIHVVDLADGHIAALLKLDESDIGCEVYNLGTGKGTSVLEMVKAFELASGKKIPLVMAGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGSQKDSTD* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1124 395 Gene3D - 239 380 - -
Lan18g1124 395 Gene3D - 51 320 - -
Lan18g1124 395 Pfam GDP-mannose 4,6 dehydratase 52 375 IPR016040 -
Lan18g1124 395 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 46 390 - -
Lan18g1124 395 TIGRFAM galE: UDP-glucose 4-epimerase GalE 51 385 IPR005886 GO:0003978|GO:0006012
Lan18g1124 395 PANTHER UDP-GLUCOSE 4-EPIMERASE 46 390 - -
Lan18g1124 395 CDD UDP_G4E_1_SDR_e 50 379 IPR005886 GO:0003978|GO:0006012
Lan18g1124 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 386 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1124 Lan-Chr18 16204995 16209706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1124 50 364 Miscellaneous Gene Families AT4G00110 28.049 2.69e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1124 K01784 - gmx:100792137 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0100 17 555918 560526 Lan18g1124 18 16204995 16209706 LSH
Lan18g1124 18 16204995 16209706 Lan6g0074 6 501054 506435 LSH
Lan18g1124 18 16204995 16209706 Lan18g0165 18 1373869 1379142 PCT
Lan18g1124 18 16204995 16209706 Lan6g2011 6 30896058 30902776 PCT