Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0065 ATGCTTGTCGGTGGTGGAATATCGTGGGATCTGAACTGGTTCCTGAAATTGATATTATCAGTGTTGGTTGTGATAATTGGATTGCACACATTGGTGAGAAAAACAGCATTGAAGTACTTTGAGGCTCACGCCACTTTCGAAGGGGACAATTCTGTCAATTCAACATCAATGCCAGGTGTTCTCGCCACCGTGGAGGATGCTTCTTGTGCCGTATGTGGGAAGAAAGGTTCTAAGAAATGTTCGCGCTGCAAAGCTGTGCGATATTGCTCACAAGAATGTCAACATTTGGATTGGAGATCCGGGCATCAGACGAGTTGCAAGGTTTCGGATCAAAACGAGGCGGATAAGTGTGAGGCTTTGGCAGTCGGGGATAAAAAGCCTCCAATTGTACTGATACCTAGTAAAGGAAGTGGAACTTCCAGGCCAATTAAGCAGCTTAAAGATGTTCTTTTTCCTTATGATGAATTTATGAAATTTTTTAACTGGGACAAGCCAGGACCTCCTCCTTGTGGACTCCTGAACTGTGGAAACAGTTGCTTTGCGAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCACTTGTTGCATACTTGTTGGAAAAAGGCCACCGCAGAGAATGTAGTTGCAATGATTGGTGCTTTCTATGTGAATTTGAAATCCATGTTGAAAGAACAAGGCTAAGTTACCACTCGTTTTCTCCCATGAACATTCTCTCTCGTTTGTCGAATATTGGCGGTACTCTTGGCCATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTGGATGAATTTGGTGGTGAGAAATCTGTCCCTTCTACCCTTCAGGAGACAACCCTTATTCAACACATATTCGGTGGCTGTCTTCAATCTGAGGTGATATGCACTAAATGTGACCAGACGTCAAGCCAGTATGAAAGCATGATGGACTTGACTGTTGAAATCCATGGAGATGCTGCCTCCTTGGAGGAATGCCTAGACCAGTTTACTGCCAAGGAGTGGCTTCATGGGGAAAATATGTATAAATGTGACGGGTGCAAGGACTATGTCAAGGCATGGAAACGTTTGACTGTGAAACGTGCTCCAAATATTCTTACAATTGCCTTAAAGAGATTTCAGAGTGGGAGGTTTGGAAAACTCAACAAGAGAGTAGCCTTCCCCGAGACTTTAAATCTTAGCCCTTACATGAGTGATGCTGGAGATGGATCTGATATCTATAAGCTATATGCTGTTGTAGTCCATATTGATATGCTAAATGCCTCATTTTTTGGTCATTACATTTGCTACATAAAGGATTTCCAAGGAAACTGGTACATGGTTGATGACTGGAAGGTTACAAGTGTGAAATTGGAGGAGGTACTTTCCGAGGGAGCATATATGCTGTTGTATAGCAGGTGTACTCCCCGACTGTCAAGCCTTCACATTCAAACTATTCAACCTTCAAGGATAGCGGAAATGCAAACAGTAAAAGTGGAAGTGAAGCTTGATCCTACCAAACAAGAATGTGTCTCAAACGTGGAGTCTGTGACTTGCAGTAGAGAGGGTGGTGTTTTGCAATCTGATGTTAGTCCAGAGTTGAAGGTTTCTGGCCATGAATACCAGCCATCATCCACTGTAATCGACTTTGATGCCAAATGCGAGGATTCTGATGATGTTGACATGATTGACGATAAGTTGACTAATGCTGCAAATGAGATTTCCTGCAGTGCTGTTGAATCATCTTCCATACCTATTTCTCAAGCTGTCAAAGATTTTATGGATGTAGATATGAGCATGTCTCCTAAAGAAACTTCAGGCGGTATGGAAGAGCAGCATGATATTGCTATCTCTGCTCCTTCTCCGGGTTTTCCAAATGACAATTCTTGCTTTGATAAGCATTCTTCTGTTTCAGCAGATTGTCCAAAAAAGGGTGATGCAGAACATGTGGATGTGTCTAAATGCAAGTTGTTAACCTCTAAAGATAGCACATATTATGGCAATGGGTATGTCAGTGCAAACAAATCTGCTGTTTGA 2043 0.4258 MLVGGGISWDLNWFLKLILSVLVVIIGLHTLVRKTALKYFEAHATFEGDNSVNSTSMPGVLATVEDASCAVCGKKGSKKCSRCKAVRYCSQECQHLDWRSGHQTSCKVSDQNEADKCEALAVGDKKPPIVLIPSKGSGTSRPIKQLKDVLFPYDEFMKFFNWDKPGPPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFEIHVERTRLSYHSFSPMNILSRLSNIGGTLGHGRQEDAHEFMRFSIDTMQSVCLDEFGGEKSVPSTLQETTLIQHIFGGCLQSEVICTKCDQTSSQYESMMDLTVEIHGDAASLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSDAGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYMVDDWKVTSVKLEEVLSEGAYMLLYSRCTPRLSSLHIQTIQPSRIAEMQTVKVEVKLDPTKQECVSNVESVTCSREGGVLQSDVSPELKVSGHEYQPSSTVIDFDAKCEDSDDVDMIDDKLTNAANEISCSAVESSSIPISQAVKDFMDVDMSMSPKETSGGMEEQHDIAISAPSPGFPNDNSCFDKHSSVSADCPKKGDAEHVDVSKCKLLTSKDSTYYGNGYVSANKSAV* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0065 680 Gene3D - 60 113 - -
Lan10g0065 680 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 170 476 IPR028889 -
Lan10g0065 680 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 606 - -
Lan10g0065 680 Pfam MYND finger 69 106 IPR002893 -
Lan10g0065 680 ProSiteProfiles Zinc finger MYND-type profile. 69 106 IPR002893 -
Lan10g0065 680 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 606 - -
Lan10g0065 680 ProSitePatterns Zinc finger MYND-type signature. 69 106 IPR002893 -
Lan10g0065 680 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 171 186 IPR018200 GO:0004843|GO:0006511
Lan10g0065 680 SUPERFAMILY Cysteine proteinases 165 477 IPR038765 -
Lan10g0065 680 SUPERFAMILY HIT/MYND zinc finger-like 66 109 - -
Lan10g0065 680 Gene3D Cysteine proteinases 163 484 - -
Lan10g0065 680 CDD Peptidase_C19E 169 474 - -
Lan10g0065 680 Pfam Ubiquitin carboxyl-terminal hydrolase 170 473 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0065 Lan-Chr10 362909 370010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0065 6 482 Miscellaneous Gene Families AT4G31670 62.190 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0065 K11855 - gmx:100799652 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0065 10 362909 370010 Lan6g2011 6 30896058 30902776 LSH