Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1254 ATGACAAATTGTTGGTTTCGGAGCTGGTTGATTTTAGAAATGGAGAATCAACAAACAAGTGATAAAACAGCTGAGAAGTTTACATGGACGGTCAAGAACTTTTCGAAATTGAGCTCCAAGCTCTACTCTGAGAATTTCTTCATTGGAGGTCATCCATGGCGGATCTTTATGTTTCCAAAGGGTAACAATGTTGACTACTTATCAATTTATTTGGATGCCGGTGACTCTGCTAATTTGCCTTATGGCTGGAGCATATTCGCAAAATTCAAGTTGAGTCTAATTAATAAGGTCAAAAGCAATATGACAAAAACAAAAGAAACTGAACATGAATTCAATGCAAGAGAGAATGACTGGGGTTTCACGGCATTCATACCTTTACATGAAATTTTGGACCCTAGCAAAGGCTTTATTGTGGATGATACTTGTATAATTGAAGCTGAGATTTTTGTTACCAAACGAGAACATGAGAATCAGGTCGATCAAGCAGCCAAAACTGCTACTGTTGCTCCGGTTTCAACACAGGTTAATGCTGTGTCTGATAATCCTTCGCCTATGGAAATGTCCTCTACCTCTTTGGGCGAACTCATTGATTTTAGGGGCTTAGGGAAAATAGAACAAGCTTTTGTTCCGCTACTGGAAGAAGTATGTTCACGACATCCATCTCTTATCGAATGTCAACAGAAGAGAAGTCGTAGGTTTATTGAATGGGCATTCACAGCTTTGGGTCGAGTTCTACATTTCCTGAAGACTAAAAAAGTTAAAGATATGAATGATGTTCTCTTTATGCATCTTCAAGTTTTATGGGAGGAGCTTGAGACATTTAAATTTGATTTGACTTGGCTGGAGCCTCATGTTCAATCCGCCTTAGGTATGAAAAGTTATATGGAGAGAGCAGCGGAGGTGAAAAAGATGAAGGACAATGTGGCTGCTCGAGAGATGGAAATCAAGAGGCTGAAGGCAAAGATGGCTGCTGCTGAGATAGATCTTGAAATAGCAAAAAGAGACTTGGTGAAAGCTGAAGAAGGCTTCGAAGAACGAGATTTGGATGGCGAACTAGGATATGAAGCATAG 1071 0.3978 MTNCWFRSWLILEMENQQTSDKTAEKFTWTVKNFSKLSSKLYSENFFIGGHPWRIFMFPKGNNVDYLSIYLDAGDSANLPYGWSIFAKFKLSLINKVKSNMTKTKETEHEFNARENDWGFTAFIPLHEILDPSKGFIVDDTCIIEAEIFVTKREHENQVDQAAKTATVAPVSTQVNAVSDNPSPMEMSSTSLGELIDFRGLGKIEQAFVPLLEEVCSRHPSLIECQQKRSRRFIEWAFTALGRVLHFLKTKKVKDMNDVLFMHLQVLWEELETFKFDLTWLEPHVQSALGMKSYMERAAEVKKMKDNVAAREMEIKRLKAKMAAAEIDLEIAKRDLVKAEEGFEERDLDGELGYEA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1254 356 CDD MATH 26 148 IPR002083 GO:0005515
Lal13g1254 356 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 20 168 IPR008974 GO:0005515
Lal13g1254 356 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 19 339 - -
Lal13g1254 356 SMART math_3 26 129 IPR002083 GO:0005515
Lal13g1254 356 Coils Coil 301 342 - -
Lal13g1254 356 SUPERFAMILY TRAF domain-like 26 152 - -
Lal13g1254 356 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 19 339 - -
Lal13g1254 356 Pfam MATH domain 31 150 IPR002083 GO:0005515
Lal13g1254 356 ProSiteProfiles MATH/TRAF domain profile. 24 148 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1254 Lal-Chr13 10995701 10999405 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1254 - - adu:107476101 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1254 13 10995701 10999405 Lal13g0880 13 6047863 6076984 ECH
Lal13g1254 13 10995701 10999405 Lal24g0695 24 5158719 5184887 ECH
Lal13g1254 13 10995701 10999405 Lal13g1254 13 10995701 10999405 ECH
Lal13g1254 13 10995701 10999405 Lal18g1444 18 16489215 16503167 ECH
Lal13g1254 13 10995701 10999405 Lal6g0181 6 1248885 1263611 ECH