Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0174 ATGACTCTCATGACCCCTGCTCCCATTGACCAGCAGGAAGACGAGGAGATGCTTGTCCCGCATACAGATTTGGCTGAGAATAATCACCAACCCATGGAAGTTGTGGCTCAACCTGAAACTGCCAACAACACTGTGGAGACTCAGCCTGTTGAGGATCCCCCATCATCTAGATTCACGTGGAGAATTGACAACTTTTCTAGGATGAATACAAAAAAGCTCTATTCAGAAATATTTGTTGTTGGTGGATATAAATGGCGTGTGCTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGACTCCACCAGTTTGCCCTATGGCTGGAGTAGATATGCACAGTTTAGCTTGGCAGTAGTTAATCAAATCCATGATAAGTACACTGTGAGAAAAGACACACAACACCAATTCAATGCACGAGAAAGTGACTGGGGTTTCACGTCCTTCATGCCACTTGGTGAATTATATGATCCTTCTAGGGGGTATCTTATGAATGATACACTTATAGTTGAAGCCGAGGTTCTTGTTCGTAGGATTGTTGACTACTGGACTTATGATTCAAAAAAGGAGACTGGCTACGTTGGTCTTAAGAACCAGGGAGCTACCTGTTATATGAATTCTTTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGGCTGTGTACCATATGCCAACTACAGAGAATGATATGCCCTCCGGAAGCATCCCTTTGGCTCTTCAAAGTTTATTCTACAAGCTCCAGTATAGCGATACCAGTGTTGCAACAAAGGAGCTGACAAAGTCCTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATAGAGTCCTATGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCCACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTTAAAGGCTGTCGTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAGGGGGATAACAAATATCAAGCTGAGCAATATGGCTTGCAGGATGCTAAGAAAGGGGTCCTATTTATTGATTTTCCACCTGTCCTGCAGCTTCAACTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGGAAGTATTTATCACCTGACGCTGACAGGACTGTCCGCAATCTTTACACACTTCACAGTGTTTTGGTTCACAGTGGCGGTGTGCATGGCGGACATTATTATGCTTTTATAAGGCCAACTCTCTCTGAGCAGTGGTACAAATTTGATGACGAGAGGGTGACAAAAGAAGACATTAAACGGGCATTAGAGGAGCAATATGGTGGCGAGGAGGAGTTACCGCAGACAAATCCTGGATTCAATAACACTCCTTTTAAGTTCACCAAATATTCAAATGCTTATATGCTGGTGTATATTCGCGAAACTGACAAGGACAAAATAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAGCAGGAAGAGAAAGAGCACAAAAAGAAGGAAAAAGCAGAGGCCCATCTTTACACTATTATAAAGGTTGCACGTGATGAAGACCTTGTAGAGCAGATCGGAAAAGATATATATTTTGATCTCGTTGACCATGACAAAGTGAGGAGTTTCCGTGTCCAGAAACAGATGTCTTTTAACCTTTTCAAGGAAGAGGTTGCAAAAGAGTTTGGTGTACCAGTTCAATTTCAGCGCTATTGGCTATGGGCAAAGCGTCAGAACCATACTTATCGTCCTAATCGGCCATTGACACACGTCGAGGAAGCACAATCTGTTGGTCAATTGAGAGAGGTATCAAACAAAGTTCACAACGCAGAACTAAAGTTATTTTTGGAAGTGGAGTTCGGACCGGACTTTCATCCCATTGCACCACCTGAAAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATACGATCCTGACAAAGAGGAGCTACGTTATGTCGGTAGGCGGTTTGTAAAGAGTACTGGTAAGCCATCAGAAATCCTAACAATGTTAAATGAAATGGCTGGTTATGATCCGAATGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAATGTCATGTGTGAACCTATTGACAAGAAATTAACTTTTCGAGCTAGCCAGTTAGAAGATGGTGATATCATATGCTTTCAGAAAGCTCCTGCTATTGATAGTGAGCAGAATGTCCGCTACCCCGATGTGCCTTCATACTTGGAATACGTGCATAATCGACAGGTTGTTCACTTTCGTTCTCTGGATAAACCTAAGGAAGATGATTTCTGCCTGGAGATGTCAAGGCTCTATACATACGATGATGTGGTCGAGAGGGTAGCTCAACAACTTGGTTTGGGTGATCCTTCAAAAATTAGGCTTACCCCACACAACTGCTACTCTCAACAACCAAAACCCCAACCTATTAAGTACCGTGGGGCAGACCATTTGTCTGATATGCTGGTTCACTACAACCAGTTAGTTAAGATAGCTGGCAGTAACGTGTTGCCAGCTACTTCGGATATTTTATACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTCTGAAAACACTGAAAGTGGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCATCAGACTCCCAAAACAGAGCACTGTGGGAGATGTCCTTGATGATCTTAAAACGAAGGTGGAAATGTCTCATCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCATAAGATATACAAGGTCTTCCCTCCCACTGAAAAGATTGAGGGCATCAATGATCAATATTGGACATTGCGTGCAGAGGAGGTTCCTGAAGAAGAGAAAAATCTTGGTCCACATGGTCGTCTAATCCATGTATACCATTTCATGAAAGACACAGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCTTTTTTCTTGGTTATACATGAAGGTGAAACATTGGATGAAATTAAAGTACGAATACAAAAGAAACTTCAAGTTCCCGATGAGGAGTTTGCTAAGTGGAAGTTTGCTTTTTTCTCATTAGGACGTCCTGAGTACCTTCAGGACTCTGATATTATATCCAGTCGTTTTCAGAGAAGAGATGTATATGGTGCTTGGGAGCAGTACCTTGGTTTGGAGCACACTGACAATGCTCCTAAAAGAACATATGCAGTTAACCAGAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAG 3396 0.4114 MTLMTPAPIDQQEDEEMLVPHTDLAENNHQPMEVVAQPETANNTVETQPVEDPPSSRFTWRIDNFSRMNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIHDKYTVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLIVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYQAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRTVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRETDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLVEQIGKDIYFDLVDHDKVRSFRVQKQMSFNLFKEEVAKEFGVPVQFQRYWLWAKRQNHTYRPNRPLTHVEEAQSVGQLREVSNKVHNAELKLFLEVEFGPDFHPIAPPEKTKDDILLFFKLYDPDKEELRYVGRRFVKSTGKPSEILTMLNEMAGYDPNEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIICFQKAPAIDSEQNVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVERVAQQLGLGDPSKIRLTPHNCYSQQPKPQPIKYRGADHLSDMLVHYNQLVKIAGSNVLPATSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVEMSHPDAELRLLEVFYHKIYKVFPPTEKIEGINDQYWTLRAEEVPEEEKNLGPHGRLIHVYHFMKDTAQNQMQIQNFGEPFFLVIHEGETLDEIKVRIQKKLQVPDEEFAKWKFAFFSLGRPEYLQDSDIISSRFQRRDVYGAWEQYLGLEHTDNAPKRTYAVNQNRHTFEKPVKIYN 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0174 1131 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 440 457 IPR018200 GO:0004843|GO:0006511
Lal22g0174 1131 SMART math_3 57 161 IPR002083 GO:0005515
Lal22g0174 1131 Pfam Ubiquitin-specific protease C-terminal 899 1109 IPR029346 -
Lal22g0174 1131 ProSiteProfiles MATH/TRAF domain profile. 55 180 IPR002083 GO:0005515
Lal22g0174 1131 SUPERFAMILY TRAF domain-like 53 185 - -
Lal22g0174 1131 CDD MATH 57 180 IPR002083 GO:0005515
Lal22g0174 1131 CDD peptidase_C19C 198 526 - -
Lal22g0174 1131 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 625 877 IPR024729 -
Lal22g0174 1131 SUPERFAMILY Cysteine proteinases 195 552 IPR038765 -
Lal22g0174 1131 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 196 IPR008974 GO:0005515
Lal22g0174 1131 Pfam MATH domain 62 181 IPR002083 GO:0005515
Lal22g0174 1131 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1056 - -
Lal22g0174 1131 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 201 216 IPR018200 GO:0004843|GO:0006511
Lal22g0174 1131 Pfam Ubiquitin carboxyl-terminal hydrolase 200 521 IPR001394 GO:0004843|GO:0016579
Lal22g0174 1131 Gene3D - 685 802 - -
Lal22g0174 1131 Gene3D - 803 912 - -
Lal22g0174 1131 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1056 - -
Lal22g0174 1131 Coils Coil 533 564 - -
Lal22g0174 1131 Gene3D Cysteine proteinases 197 525 - -
Lal22g0174 1131 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 200 524 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0174 Lal-Chr22 1076340 1089130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0174 186 489 Miscellaneous Gene Families AT4G31670 24.924 1.09e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0174 K11838 - gmx:100800328 2123.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1444 18 16489215 16503167 Lal22g0174 22 1076340 1089130 LSH
Lal22g0174 22 1076340 1089130 Lal6g0181 6 1248885 1263611 LSH