Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1176 ATGGTGTTGAAGAAGAAGCTAGGTCATGGATTCAATGGCTTTCAAGTCCCCTTTATACCTCGACGTCCTAGATCTGCAAGAAGGAGTTGCTATTCCAAGAAATCGGTTGAGGACGGTCAAGTTTGTGCCTTCGAACTACTGGCATCTTTAGCTGGCAAGTTACTGGAGGAGAGTGAAAGTTCTGCTTCTAGCAATGCCTCTGAAGGAATTCGTCTTGTTAATGAGCGAGATAAACAAGATGAGGTTAGGCCACTAATAGCACAAGGAATTCATCAGGGAAGTTGCGCGGAGAGTTTTTTTATGACTGATGTAGCCTCACAAAATAGTACTCAGAAATCTCTTCTGCGTGCCAAGACTGATTCTGTACTAGGATGCAATTCTGATGTGAAGGCTGAAGCTTTCGAATGGGAGAACAAAATTGGACGTTGTTCTAATAGTTATTGTAATAAATTTGTAGAAGCAGCTGGAGATTTTCGGGGGTCTTATGATGGCAATGTAAAGAATGGACTTATACAGGAATGGGAGGCTGGCAGTTCCGGCTTTCAGAGATCAACTTTGGTTGATAAATTTAGTTTGAAGGACCAATTGGAGTTGCGCGGCTCTACCGCACTAATTGACTCAAACAGTAATGTTAAGTCTCCATATTGTAGCGAATCTTTTCCCAGTGCTTCATTTTCCAAGCATGGGAATGATATTAAGTTAGGTTTTAGAGATGATGACGAAAACTTTTTAAGGTGCAATGAGGTTTGTACTAAGTCAAAGGCTTTTAGGTCTCCACAACACATTGCACACCCAAAAATCAGGAAACCCCTGCTTTGCAAATACTGGAAGTCTAGTCCAAAGTTGAAGGAGTGCGAACTTTCTAGATCTGATGTAGACGTAAAGCCTCTTCATCATAAGAGAACGGCTAGTCACGGTTTCGAAACATCTCAGCACAACAATCTTGTTAAAAGGAGGAAGTTCTTTGACCGAGTTTCAAGGGTAACTTCTGATGGAGGGTTCAGCAGTGAGAGTGTGTCTAATTCACCTGAGAAAGGAATTGACAGACACAACCCAAACTCATCCGCGAAACTGCATGTACCTAAGGATTCTCACGTGAAGTTTAGCATTAAGTCATTAAGGATACCGGATCTTTATATCGAGGTTCCTGAAACTGCAACTGTTGGTATGCTGAAGAGAACTATCATGGAGGAGGTGATGGCTATACTTGAAGATAGTGTGCATGTTGGTGTTCTTCTTCAGGGACAAAAAGTTAATGATGATAATAGAACACTTGTGCAGACTGGTATATCTTGCAAAGAAAATTTGGACACTCTTAGTTTCATGTTGGAGCCGAGTTCTCTACTAGCTCCTGCGGCTGCTTGTGTTGGTGATCCTTCGTCTCAATGTGAAACATCCCAACCTACCAGGTCCTCAGAAATTCCAGTCTTAGAGTCAGGGAATACTGATACTTTGCATGACCCCTCCTTGCCGACAAATCCGGGCAACCTAATTGAAAGTAACCATGATTCTACTACTTCCCCCACTGACACTATAATTGAAAACATAACACCAGATTCCAAAGCCCTAGTTGCTGTACCTACTAGTCCTGAAGCATTAGCCGTTGTTCCCGTGACTCAGAAAACCAAGCGTGCTGAGATTGCACAGCGTCGTACCCGGAGACCGTTCTCTGTCACCGAGGTAGAAGCACTTGTTCGTGCAGTTGAGGAACTTGGAACTGGAAGGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGATTTGAAGGATAAATGGAAAACATTGGTGCACACTGCAAGAATCTCTCCTCAACAAAGGAGAGGTGAGCAAGTACCTCAAGAACTCTTAGACAGAGTTTTGGCTGCACATGGTTATTGGTCTAAGCACCAAGCCAAGCAGAATGGAAAGCACCAAGCTATAGCTGGAAGTGTTGAATGTGTGCAATCACTTGTGATGGTGTAA 1983 0.4307 MVLKKKLGHGFNGFQVPFIPRRPRSARRSCYSKKSVEDGQVCAFELLASLAGKLLEESESSASSNASEGIRLVNERDKQDEVRPLIAQGIHQGSCAESFFMTDVASQNSTQKSLLRAKTDSVLGCNSDVKAEAFEWENKIGRCSNSYCNKFVEAAGDFRGSYDGNVKNGLIQEWEAGSSGFQRSTLVDKFSLKDQLELRGSTALIDSNSNVKSPYCSESFPSASFSKHGNDIKLGFRDDDENFLRCNEVCTKSKAFRSPQHIAHPKIRKPLLCKYWKSSPKLKECELSRSDVDVKPLHHKRTASHGFETSQHNNLVKRRKFFDRVSRVTSDGGFSSESVSNSPEKGIDRHNPNSSAKLHVPKDSHVKFSIKSLRIPDLYIEVPETATVGMLKRTIMEEVMAILEDSVHVGVLLQGQKVNDDNRTLVQTGISCKENLDTLSFMLEPSSLLAPAAACVGDPSSQCETSQPTRSSEIPVLESGNTDTLHDPSLPTNPGNLIESNHDSTTSPTDTIIENITPDSKALVAVPTSPEALAVVPVTQKTKRAEIAQRRTRRPFSVTEVEALVRAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEQVPQELLDRVLAAHGYWSKHQAKQNGKHQAIAGSVECVQSLVMV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1176 660 MobiDBLite consensus disorder prediction 459 489 - -
Lal5g1176 660 MobiDBLite consensus disorder prediction 330 349 - -
Lal5g1176 660 MobiDBLite consensus disorder prediction 330 359 - -
Lal5g1176 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 548 607 IPR017930 -
Lal5g1176 660 CDD SANT_TRF 554 604 - -
Lal5g1176 660 SUPERFAMILY Homeodomain-like 554 635 IPR009057 -
Lal5g1176 660 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 653 - -
Lal5g1176 660 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 653 IPR031105 -
Lal5g1176 660 ProSiteProfiles Myb-like domain profile. 548 603 IPR001005 -
Lal5g1176 660 SMART sant 552 605 IPR001005 -
Lal5g1176 660 MobiDBLite consensus disorder prediction 457 489 - -
Lal5g1176 660 Gene3D - 541 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1176 Lal-Chr5 14519290 14524428 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1176 - - gmx:100814318 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0270 22 1722372 1727168 Lal5g1176 5 14519290 14524428 ECH
Lal2g1844 2 20775352 20780707 Lal5g1176 5 14519290 14524428 ECH
Lal2g0219 2 1279399 1285023 Lal5g1176 5 14519290 14524428 ECH
Lal5g1176 5 14519290 14524428 Lal5g1176 5 14519290 14524428 ECH
Lal3g0540 3 4001070 4006535 Lal5g1176 5 14519290 14524428 LSH
Lal5g1176 5 14519290 14524428 Lal18g1326 18 15728801 15733075 LSH