Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0540 ATGGTGTTGAAGAAGAGGCTAAGTCATGGATTCAATGGCTTTGAAGTCCCCTTTATACCTCGCCGTCCTAGATCTGCAAGAAGGAAGTGTCCTTCCAAAAAAGATGATCAAGTTTGTGCCTTTGAACTACTGGCCTCTTTAGCCGGCAAGTTGTTGGAGGAGGGTGAAAGTTCCGCTTCTAGCAATGCGTCTGAATGTAATCATCAGCCTTTCGTTAGCCAAGACGACAATGAGCGAGATAGGCAAGAAGAAGTTAAACCATTAATAGCCGATGACATTCCTCATCGAAGTTGTGCAGAGAGTATTTTTGTGACTGATGTAGCCTCAGAAAATAGTAGTCAGAAGTCTCTTCTGCATGCCAAGACTGAATGTGTACTAGGACACAATTCTGATGCGAAGTCTGAAATTATCAAATGGGAGAAAAAATTTGAACGCCATTGTAAGAGTTATTCTAATAAATTAGTAGAATCACCTGGAGATTTTAGGAGGCCTTGTGATGGTAATGTAAAGAATGGATTTAGACGGGAACTGGAGGATGGCAGTTCCGGCTTTCAGAGATCAACATTAGCTGATAAGTGTAGTTTGAAGGACCAATCGAAGTTGTATGACTCTCCTGCGCTACTTGACTCTAACAGCGATGTTAAACCACAATATTGTAGGGAGTCTTTTCCTAGTGCTCCATTTTCCAAGCATGGGAATGATGTTAAGTTAGGTTTTAGAGATGATGGCGAAAACTTTTTAAGGTGCAATGATGTTTGCACCAAGTCAAAGGCTTTTAGGACTCCAAAACACATTGCACACCGGAAAATCAGGAAACAGCTGTTTTCCAAACACTGGAAGGCTGGTCCAAAGTTGAAGGATTGTGAACTTTCTAAATCTGATGTAGAAGTAAAACCTCTTTATTGTAAGAGAAAGGCTAGTTATGGTTTCATAACATCTCAGCACAATACTCTTGCTAAGAAGAAAAAATTATTTGACCGAGTTTCGGGGGTAACTTCTGATGGAGTATTCAGTAGTGAGAGTCTGTCTAATTCACCTGAGAAAGGAATTCATGGAGACAACTCAGACTTATCTGCAAAGCTGCACGCTCCTAAGGATTCTCATGTGAAGTTTAGCATTAAGTCATTAACGATACCAGAGCTATATATTGAGGTTCCGGACACTGCAACTGTTGGTTTTCTAAAGAGGAGAATCATGGAGGAGGTGATGGCTATACTCGAAGATAATGTTCATGTTGGGGTTCTTTTTCAAGAGGAAAAAGTTAAAGACGACAATAGAACACTTATGCAGACTGGTATATCTTGCAAAGAAAATCTGGATACTCTAACTTTCGTGTTGGAGCCGAGTTCTCTACTAACTTCTCCAGCTGCTTGTGTTAGTGATCCTTCTCAATTTGAAACATCCCAGCCTGCTAGGACCCCAAAAACTCCAATTTTAGAGTCAGGGAATACGGATACTTTGGGTGACTCCTCCTTGCTGACAAGTCCAGGCAACGTAACTGAAAGTAAACATGAGTCTACTACTTCCCCGGATGACACTATAGGTGACGAAATAACACCAGATTCCAAAGCGCTGGTTGCTGTTCCTATTATCCCTGAAGCATTAGCTGTGGTTCCTGCGAGTCATAAAACCAAGTTTGCTGAGTTTGCCCAGCGTCGAACCAGGAGACCATTCTCTGTGACCGAGGTAGAAGCACTTGTACATATGGTTGAGGAACTTGGAACTGGAAGGTGGCGAGATGTTAAGTTGCGAGCTTTTCAGAATGCAGACCATAGAACATATGTGGATTTGAAGGATAAATGGAAAACATTAGTACACACAGCAACAATCTCCCCTCAACAGAGGAGAGGAGAGGCAGTACCTCAGAAGCTCTTGGACCGAGTTTTGGCTGCGCATAGTTATTGGTCTCAGCACCAAGGCAAACAGAATGTCAAGCATCAAGCTATGCCTGAAATATTGAATGTGTCCAATCACTTGTGA 1980 0.4207 MVLKKRLSHGFNGFEVPFIPRRPRSARRKCPSKKDDQVCAFELLASLAGKLLEEGESSASSNASECNHQPFVSQDDNERDRQEEVKPLIADDIPHRSCAESIFVTDVASENSSQKSLLHAKTECVLGHNSDAKSEIIKWEKKFERHCKSYSNKLVESPGDFRRPCDGNVKNGFRRELEDGSSGFQRSTLADKCSLKDQSKLYDSPALLDSNSDVKPQYCRESFPSAPFSKHGNDVKLGFRDDGENFLRCNDVCTKSKAFRTPKHIAHRKIRKQLFSKHWKAGPKLKDCELSKSDVEVKPLYCKRKASYGFITSQHNTLAKKKKLFDRVSGVTSDGVFSSESLSNSPEKGIHGDNSDLSAKLHAPKDSHVKFSIKSLTIPELYIEVPDTATVGFLKRRIMEEVMAILEDNVHVGVLFQEEKVKDDNRTLMQTGISCKENLDTLTFVLEPSSLLTSPAACVSDPSQFETSQPARTPKTPILESGNTDTLGDSSLLTSPGNVTESKHESTTSPDDTIGDEITPDSKALVAVPIIPEALAVVPASHKTKFAEFAQRRTRRPFSVTEVEALVHMVEELGTGRWRDVKLRAFQNADHRTYVDLKDKWKTLVHTATISPQQRRGEAVPQKLLDRVLAAHSYWSQHQGKQNVKHQAMPEILNVSNHL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0540 659 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 655 - -
Lal3g0540 659 Gene3D - 543 647 - -
Lal3g0540 659 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 655 IPR031105 -
Lal3g0540 659 CDD SANT_TRF 556 606 - -
Lal3g0540 659 SUPERFAMILY Homeodomain-like 556 637 IPR009057 -
Lal3g0540 659 MobiDBLite consensus disorder prediction 457 516 - -
Lal3g0540 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 550 609 IPR017930 -
Lal3g0540 659 ProSiteProfiles Myb-like domain profile. 550 605 IPR001005 -
Lal3g0540 659 SUPERFAMILY Ubiquitin-like 366 447 IPR029071 -
Lal3g0540 659 SMART sant 554 607 IPR001005 -
Lal3g0540 659 MobiDBLite consensus disorder prediction 457 504 - -
Lal3g0540 659 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0540 Lal-Chr3 4001070 4006535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0540 - - gmx:100814318 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1844 2 20775352 20780707 Lal3g0540 3 4001070 4006535 ECH
Lal2g0219 2 1279399 1285023 Lal3g0540 3 4001070 4006535 ECH
Lal3g0540 3 4001070 4006535 Lal3g0540 3 4001070 4006535 ECH
Lal3g0540 3 4001070 4006535 Lal5g1176 5 14519290 14524428 LSH
Lal3g0540 3 4001070 4006535 Lal18g1326 18 15728801 15733075 LSH