Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0319 ATGGCTGCAATTATAGTGATTTTTGACTTTGACTCAACAATCATCGAATGTGATAGTGATAACTGGGTACTTGATGAATTTGGTTTAACTGAAAAGTTCTATAAGCTTCTTCCTACTATGCCTTGGAACCCTCTCATGGATAAGATGATGAGTGAACTTCATTCACAAGGAAAAACCATTGAAGACATTGTACAAGTTCTGCACCAAACTCCAATACATCCCTCCATTGTTCCTGCCATTGAAGCAGCATATTCCCTTGGGTGTGAGCTTAAGATCGTGAGTGACGCAAATATTTTCTTTATAGAAACAATTTTGAAGCATCATGGAGTATGGAATTGTTTCTCAGAGGGATTGGTCATAGAAAGGATTCAAAATTTGCTTGATGGGTCAGGAAAGAAGAAATTTATCTACCTTGGAGATGGAAGTGGAGATTTTTGTCCTAGTTTGAAGCTCAAAGATAATGATTATTTGATGCCTAGAACCAACTTTGCATTGTGTGATTTAGTATCTAAAAATTCTAAGGACATAAAACCTGAGGTGCATGCATGGAAAGATGGGGAAGAACTTAAGAATATTTTGGTCCATATTATCAACAAAACTATTGGTGAAGAAAACAACATAATTAGACCAACAATCTCAGTTGATTGCATGTTGGAGACAATTTCAATTGATGCTCATAAAAATTTCCCTAAAGTTCTCTCAGTTCCTCATTAA 714 0.3571 MAAIIVIFDFDSTIIECDSDNWVLDEFGLTEKFYKLLPTMPWNPLMDKMMSELHSQGKTIEDIVQVLHQTPIHPSIVPAIEAAYSLGCELKIVSDANIFFIETILKHHGVWNCFSEGLVIERIQNLLDGSGKKKFIYLGDGSGDFCPSLKLKDNDYLMPRTNFALCDLVSKNSKDIKPEVHAWKDGEELKNILVHIINKTIGEENNIIRPTISVDCMLETISIDAHKNFPKVLSVPH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0319 237 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 117 236 - -
Lal25g0319 237 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 1 116 - -
Lal25g0319 237 Gene3D - 1 152 IPR023214 -
Lal25g0319 237 SUPERFAMILY HAD-like 4 147 IPR036412 -
Lal25g0319 237 PIRSF PLP_phosphatas_PHOSPHO2 1 120 IPR016965 GO:0016791
Lal25g0319 237 PIRSF PLP_phosphatas_PHOSPHO2 116 201 IPR016965 GO:0016791
Lal25g0319 237 Pfam Putative Phosphatase 4 116 IPR016965 GO:0016791
Lal25g0319 237 Pfam Putative Phosphatase 117 196 IPR016965 GO:0016791
Lal25g0319 237 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 129 - -
Lal25g0319 237 PANTHER PHOSPHATASE, ORPHAN 1, 2 117 236 IPR016965 GO:0016791
Lal25g0319 237 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 116 IPR016965 GO:0016791
Lal25g0319 237 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 116 IPR006384 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0319 Lal-Chr25 2182229 2184355 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0319 K13248 - gmx:100789743 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1102 10 17879778 17883893 Lal25g0319 25 2182229 2184355 ECH
Lal16g1109 16 7502123 7503619 Lal25g0319 25 2182229 2184355 ECH
Lal23g0549 23 8368825 8371510 Lal25g0319 25 2182229 2184355 ECH
Lal25g0319 25 2182229 2184355 Lal25g0319 25 2182229 2184355 ECH
Lal25g0319 25 2182229 2184355 Lal10g1102 10 17879778 17883893 LSH
Lal20g1107 20 15253117 15255264 Lal25g0319 25 2182229 2184355 PCT
Lal18g0151 18 1200399 1202206 Lal25g0319 25 2182229 2184355 PCT