Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0549 ATGGCAAATATGGGCGAAAGCGTAATTGTGATATTTGATTTTGATCGCACAATAATCGACGATGATAGCAACAGATGGGTTATTTCTGAATTGGGTCTCACTCATCTCTTCAATCAACTTCGCTCAACCTTGCCTTGGACCTCTCTCATGGATAGGATGATGAAAGAGCTTCATTCTCAAGGCATTACCATAAATCACATTGCTGATTGTCTCAAAAGGGCTTATTTTCATCCTTCCATTCTCTCAGCTATCAAATCTGCCCATGTTCTTGGGTGTGACTTGAAGATAATTAGTGATGCTAATACGTTTTATATTAAGACCATTCTTGAACATCATGGTGTATGGGATTGTTTTTCTGAGGTTAATACAAACCCGACTTTTGTGGATGAAGAGGGGTGCCTTAGGATCACTCCATTCCATGATTCAACTGTGTCTCCTCATTCTTGTCATCTCTGCCCTCCCAATATGTGCAAGGGTTTAGTGATAAACCGAATCCGAGGTTCTTTACCTGAAAACAAAAGATTCATCTACATCGGAGATGGGAAAGGTGACTATTGCCCAACTTTGAAGCTGGAAGGAAGTGATTTTGTGATGCCAAGGAAGGATTATCCCCTATCGAACCAGATTTTCAGTGATCCTAAACTAGTTAATGCCGAAGTACATGAGTGGAGCAGTGGGGAGGAATTGGAAAGCATACTACTGAAGCTTATCAACAAATTAATTATAGAGATCAAGATGTAA 741 0.4008 MANMGESVIVIFDFDRTIIDDDSNRWVISELGLTHLFNQLRSTLPWTSLMDRMMKELHSQGITINHIADCLKRAYFHPSILSAIKSAHVLGCDLKIISDANTFYIKTILEHHGVWDCFSEVNTNPTFVDEEGCLRITPFHDSTVSPHSCHLCPPNMCKGLVINRIRGSLPENKRFIYIGDGKGDYCPTLKLEGSDFVMPRKDYPLSNQIFSDPKLVNAEVHEWSSGEELESILLKLINKLIIEIKM 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0549 246 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 8 201 IPR006384 GO:0016791
Lal23g0549 246 PIRSF PLP_phosphatas_PHOSPHO2 1 241 IPR016965 GO:0016791
Lal23g0549 246 SUPERFAMILY HAD-like 9 187 IPR036412 -
Lal23g0549 246 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 10 189 - -
Lal23g0549 246 PANTHER THIAMINE PHOSPHATE PHOSPHATASE-LIKE PROTEIN 4 243 - -
Lal23g0549 246 Pfam Putative Phosphatase 9 237 IPR016965 GO:0016791
Lal23g0549 246 PANTHER PHOSPHATASE, ORPHAN 1, 2 4 243 IPR016965 GO:0016791
Lal23g0549 246 Gene3D - 2 193 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0549 Lal-Chr23 8368825 8371510 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0549 K13248 - gmx:100306472 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0549 23 8368825 8371510 Lal20g1107 20 15253117 15255264 ECH
Lal23g0549 23 8368825 8371510 Lal18g0151 18 1200399 1202206 ECH
Lal23g0549 23 8368825 8371510 Lal10g1102 10 17879778 17883893 ECH
Lal23g0549 23 8368825 8371510 Lal25g0319 25 2182229 2184355 ECH
Lal23g0549 23 8368825 8371510 Lal23g0549 23 8368825 8371510 ECH
Lal16g1109 16 7502123 7503619 Lal23g0549 23 8368825 8371510 LSH