Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1107 ATGTCAGGAATAGTAGTTATTTTTGATTTTGACAAGACTATTGTTGATTGTGATAGTGATAATTGGGTCATTGATGAATTGGGTTTCACTGATTTGTTCAATCAACTTCTTCCTACCATGCCTTGGAATTCTCTCATGGATAGAATGATGATGGAGCTTCATTCACAAGGTATAACCATTGGAGAAATTGAAAAGGTTCTTCATAGGATTCCTATTCATCCAAGAATAATACCTTCACTAAAATCAGCTCATGCTCTAGGGTGTGATTTGAGGATTGTAAGTGATGCAAACTTGTTCTTCATTGAGGCAATTTTGAAGCACTTAGGAATAAGGGAATATTTTTCAGAGATTAACACTAACCCAGGTTATGTTAATGAAGAAGGAAGGTTAAGAATTTTGCCTTACCATGACTTTAACAAATCTCCACATGGCTGCACTTTGTGCCCTCCAAATATGTGCAAGGGTGTAATCATAGATAGAATCCAAGATTCAATGTCCATTAATGAGGATGATAAGAGGTTGATCTATCTTGGTGATGGTGTTGGTGACTATTGTCCAAGTTTAAGGCTTAAAGATAGAGACTTTATGATGCCAAGAAAGAACTTTCCAGTTTGGGATTTGATATGTAAAAACCCTTTGCTTCTTAAGGCTGAAATCCATGGCTGGAGTGATGGTGAAGAACAAGAACAAGTTTTGTTGCATTTGATCAACAAAATTGAAATGGATAAAAATTCTCACTTCATTTCATCTGATTATTGCAAGTTACAGATTCTATCTGTTTCTGCTTCTGATGCTTTGCCTAAAGTTCTCTCAGTTAGGCCATAA 825 0.3576 MSGIVVIFDFDKTIVDCDSDNWVIDELGFTDLFNQLLPTMPWNSLMDRMMMELHSQGITIGEIEKVLHRIPIHPRIIPSLKSAHALGCDLRIVSDANLFFIEAILKHLGIREYFSEINTNPGYVNEEGRLRILPYHDFNKSPHGCTLCPPNMCKGVIIDRIQDSMSINEDDKRLIYLGDGVGDYCPSLRLKDRDFMMPRKNFPVWDLICKNPLLLKAEIHGWSDGEEQEQVLLHLINKIEMDKNSHFISSDYCKLQILSVSASDALPKVLSVRP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1107 274 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 188 - -
Lal20g1107 274 Pfam Putative Phosphatase 4 236 IPR016965 GO:0016791
Lal20g1107 274 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 272 IPR016965 GO:0016791
Lal20g1107 274 Gene3D - 2 190 IPR023214 -
Lal20g1107 274 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 200 IPR006384 GO:0016791
Lal20g1107 274 SUPERFAMILY HAD-like 4 188 IPR036412 -
Lal20g1107 274 PANTHER INORGANIC PYROPHOSPHATASE 1 272 - -
Lal20g1107 274 PIRSF PLP_phosphatas_PHOSPHO2 1 240 IPR016965 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1107 Lal-Chr20 15253117 15255264 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1107 K13248 - gmx:100785878 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1109 16 7502123 7503619 Lal20g1107 20 15253117 15255264 ECH
Lal23g0549 23 8368825 8371510 Lal20g1107 20 15253117 15255264 ECH
Lal20g1107 20 15253117 15255264 Lal20g1107 20 15253117 15255264 ECH
Lal20g1107 20 15253117 15255264 Lal18g0151 18 1200399 1202206 LSH
Lal20g1107 20 15253117 15255264 Lal25g0319 25 2182229 2184355 PCT
Lal20g1107 20 15253117 15255264 Lal10g1102 10 17879778 17883893 PCT