Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1102 ATGGCTGGAATTGTTGTAGTTTTCGACTTTGACAAAACCATTATCAATTGTGACTGTGACAACTGGGTTGTTGATGAGTTGGGTTTCACTGACTTGTTCAATCAACTCCTTCCAACCATGTCTTGGAACACTCTCATGGATATGATGATGATGGAGCTTCATTCTCATGGGAAAACTATTGAGGACATTGTCAAAAGTTTCCACAACATTCCTATACACCCTAGAGTAATCCCTGCCATTAAAGCAGCCCATGCTTTTGGGTGCGATTTGAGGATTGTCAGTGATGCAAACACGTTCTTCATTGAGACAATTTTGAGGCACTTAGGAATAAGGGAATATTTTTCGGAGATTAACACTAACCCTGGTTATGTTGGTGAAGATGGAAGGTTACGAATTTTGCCTTATCATGACTTCAAAAACTGTCACCATAGATGCAATTTGTGCCCTCCAAACATGTGCAAGGGTCTAATCATAGAGAGGATCCAAAATTCAATAGCACCTGAAGAAAAGAAGAGGTTGATATATCTAGGGGATGGTGTTGGAGATTATTGCCCAAGTTTGAGGCTTAAAGAAAAAGACTTTATGATGCCAAGGAAGAATTTCCCAGTTTGGGAGTTGATATGCAAAGACCCTTTGCTTGTTAAGGCTGAAATGCATGAATGGAGTGATGGGGAAGATATGGAACAAATATTGTTGCACCTAATTAACAAAATTTCAACTGAGGAAAGTGCTCAGCTCATTTCAACTGATTGCAAGCCTCAAACTCTATCAGCTCATGTCCCTCAACTTCTCCAAGTTCACCAATAA 807 0.3978 MAGIVVVFDFDKTIINCDCDNWVVDELGFTDLFNQLLPTMSWNTLMDMMMMELHSHGKTIEDIVKSFHNIPIHPRVIPAIKAAHAFGCDLRIVSDANTFFIETILRHLGIREYFSEINTNPGYVGEDGRLRILPYHDFKNCHHRCNLCPPNMCKGLIIERIQNSIAPEEKKRLIYLGDGVGDYCPSLRLKEKDFMMPRKNFPVWELICKDPLLVKAEMHEWSDGEDMEQILLHLINKISTEESAQLISTDCKPQTLSAHVPQLLQVHQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1102 268 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 187 - -
Lal10g1102 268 PIRSF PLP_phosphatas_PHOSPHO2 1 239 IPR016965 GO:0016791
Lal10g1102 268 Pfam Putative Phosphatase 4 235 IPR016965 GO:0016791
Lal10g1102 268 PANTHER INORGANIC PYROPHOSPHATASE 1 264 - -
Lal10g1102 268 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 199 IPR006384 GO:0016791
Lal10g1102 268 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 264 IPR016965 GO:0016791
Lal10g1102 268 Gene3D - 2 189 IPR023214 -
Lal10g1102 268 SUPERFAMILY HAD-like 5 205 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1102 Lal-Chr10 17879778 17883893 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1102 K13248 - gmx:100782134 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1102 10 17879778 17883893 Lal25g0319 25 2182229 2184355 ECH
Lal16g1109 16 7502123 7503619 Lal10g1102 10 17879778 17883893 ECH
Lal23g0549 23 8368825 8371510 Lal10g1102 10 17879778 17883893 ECH
Lal10g1102 10 17879778 17883893 Lal10g1102 10 17879778 17883893 ECH
Lal25g0319 25 2182229 2184355 Lal10g1102 10 17879778 17883893 LSH
Lal20g1107 20 15253117 15255264 Lal10g1102 10 17879778 17883893 PCT
Lal18g0151 18 1200399 1202206 Lal10g1102 10 17879778 17883893 PCT