Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1109 ATGGGTGAAAAGACGGTGGTGATATTCGACTTTGATCATACAATAATCGATGATGACAGTGATAGATGGGTGGTTTCTGAATTGGGTCTCACCCATCTCTTTAATCAACTTCGTTCAACCTTGCCTTCCATTTCTCTCATGGATAGGATGATGAAGGAACTCCACTCTCAAGGGATCACCACAAACCACATTGCTGATTGTCTCAAAAGAGCTTATTTGCATCCTTCCATTCTCTCATCTATCAAATCTGCCCATTCTCTTCGGTGTGATTTGAGGTTAATTAGTGATGCTAATACGTTTTATATTAAGACCATAATGGAACATCATGGTGCATGGGAATGCTTTTCTGAGGTGAATACAAACCCAGGTTATGTGGATGAGGAAGGATGCCTTAGAATCATTCCATTCCATGATTCAACATTGCCTCCTCATGCTTGTCATCTTTGCCCTCCCAACATGTGCAAGGGTTTAGTAATAGATCGAATCCGAGGTTCTTTACCTGAAAACAGAAGATTCATCTACATTGGAGATGGGATAGGTGATTATTGCCCAACTTTGAAGCTTAAGGGATGTGATTTTGTTATGCCAAGGAAGGATTATCCACTATGGGACCAAATTTCTAGTGACCCTAAACTAGTTAATGCAGAAGTTCACGAGTGGAGCAATGGGGAGGAATTGGAAAACACACTACTCAATCTTATCAACAAATTAGGTATAGCTTAA 723 0.4025 MGEKTVVIFDFDHTIIDDDSDRWVVSELGLTHLFNQLRSTLPSISLMDRMMKELHSQGITTNHIADCLKRAYLHPSILSSIKSAHSLRCDLRLISDANTFYIKTIMEHHGAWECFSEVNTNPGYVDEEGCLRIIPFHDSTLPPHACHLCPPNMCKGLVIDRIRGSLPENRRFIYIGDGIGDYCPTLKLKGCDFVMPRKDYPLWDQISSDPKLVNAEVHEWSNGEELENTLLNLINKLGIA 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1109 240 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 186 - -
Lal16g1109 240 Pfam Putative Phosphatase 5 234 IPR016965 GO:0016791
Lal16g1109 240 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 236 IPR016965 GO:0016791
Lal16g1109 240 PANTHER THIAMINE PHOSPHATE PHOSPHATASE-LIKE PROTEIN 1 236 - -
Lal16g1109 240 Gene3D - 1 200 IPR023214 -
Lal16g1109 240 PIRSF PLP_phosphatas_PHOSPHO2 1 238 IPR016965 GO:0016791
Lal16g1109 240 SUPERFAMILY HAD-like 4 200 IPR036412 -
Lal16g1109 240 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 198 IPR006384 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1109 Lal-Chr16 7502123 7503619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1109 K13248 - gmx:100306472 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1109 16 7502123 7503619 Lal20g1107 20 15253117 15255264 ECH
Lal16g1109 16 7502123 7503619 Lal18g0151 18 1200399 1202206 ECH
Lal16g1109 16 7502123 7503619 Lal10g1102 10 17879778 17883893 ECH
Lal16g1109 16 7502123 7503619 Lal25g0319 25 2182229 2184355 ECH
Lal16g1109 16 7502123 7503619 Lal16g1109 16 7502123 7503619 ECH
Lal16g1109 16 7502123 7503619 Lal23g0549 23 8368825 8371510 LSH