Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1572 ATGTCTAGACAGACTTACAAAGTATGTTTTTGTTGCCGGCGACGGTTCAAGGTGGCCGTGTCGGAAGCCCCGCCGGAGGTAAAGACCCTTTTCCAACATTACTCCGATAATGGTATCATGTCTGCTTCAAACCTTCGGAGTTTCATGGTTGAGGTGCAGAGAGAAGAAAAGACCAGTGTTGAGGAAGCACAAGGCATCATTAATAGTCTCAAACATTTGACTATCTTTCATTCAAGGGGATTCAATCTTGAATCTTTCTTCAAGTTTCTCTTCACTCAAAATAACTCTCCTCTTTTACCTTCAACTGTGGTGCACCATGATATGACTTCACCTTTGTCTCATTATTTCATATATACTGGTCATAATTCCTATCTAACTGGGAATCAACTTAGCAGTGATTGCAGTGATATCCCAATCATACAAGCATTGCACAGAGGTGTAAGGGTGATTGAATTGGATATATGGCCTAATGGGTCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTAACTACTCCTGTGGCACTCATCACATGTTTGAGGTCTATTAAGGAGCATGCCTTTGTTGCATCAGAATATCCACTTGTAATAACCCTTGAAGACCACCTTACTCCAGATCTTCAGGCCAAAGTAGCCGAGATGGTTACTCAAACATTTGGAGACATACTATTTTGTCCTAGTTCAGAAAATTTCGACGAATTCCCTTCTCCCGAATCACTTAAAAGGAGGATTATTATATCAACAAAACCACCTAAGGAGTACCTTGAAGAAAAAGAAGTGAAGGAAAAAGAGGATGATTTGCATAAGGGAAAGGCTGAAGGTGATGAAGAAACATGGGGTAAAGAAGTACCAAGTTTGAGAGGCGATGCTATATCTGATTACAAGAGCAATGTGGATGAAGATGATCTTGATGACGAGGATGATCTTGACGAATCAGAAAAGTCGCACCAAAATGCATCAGCTGAATATAGGCGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGACTAGAGGAATGTCTCAAAGTGGATCCTGATAATGTTAGGCGTCTAAGTTTAAGTGAGCCGGAGCTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTATCAGGTTTACTCAGCGGAACATACTGAGAGTGTATCCAAAAGGAACTCGCATCATGTCATCAAATTATAACCCGTTAATCGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGTCATGGAAGATCTCTTTGGGTGATGCAAGGAATGTTTAGAGCGAACGGCGGGTGTGGATATGTTAAAAAACCAGATTTTTTATTAAAGAGTGGTAGGAATAATGAGATCTTTGATCCCAAAGTTGAATCACCTGTGAAAATTACTTTGAAGGTAACTGTATATATGGGTGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATTTTCACCTCCAGATTTCTACACAAGAGTGGGGATTGCTGGAGTTCCTCATGACACCGTTATGAAAAAAACTAAGGCAGTAGAAGATAACTGGTTACCTAGTTGGAATGAGGTATTCGAGTTTCCGCTTTCGATTCCAGAATTGGCTCTGCTTCGAATAGAAGTTCATGAATATGATATGTCTGAGAAGGATGATTTTGGTGGCCAAACATGCTTGCCTGTGTGGGAACTAAGAAGTGGAATTAGAGCAGTTCCATTGTATAGCCAGAAGGGAGATAAGTACAACAATGTAAAGCTTCTCATGCGCTTTGAGTTCATTTGA 1770 0.4051 MSRQTYKVCFCCRRRFKVAVSEAPPEVKTLFQHYSDNGIMSASNLRSFMVEVQREEKTSVEEAQGIINSLKHLTIFHSRGFNLESFFKFLFTQNNSPLLPSTVVHHDMTSPLSHYFIYTGHNSYLTGNQLSSDCSDIPIIQALHRGVRVIELDIWPNGSKDDVDVLHGRTLTTPVALITCLRSIKEHAFVASEYPLVITLEDHLTPDLQAKVAEMVTQTFGDILFCPSSENFDEFPSPESLKRRIIISTKPPKEYLEEKEVKEKEDDLHKGKAEGDEETWGKEVPSLRGDAISDYKSNVDEDDLDDEDDLDESEKSHQNASAEYRRLIAIHAGKPKGGLEECLKVDPDNVRRLSLSEPELEKAAITHGKEIIRFTQRNILRVYPKGTRIMSSNYNPLIGWMHGAQMVAFNMQGHGRSLWVMQGMFRANGGCGYVKKPDFLLKSGRNNEIFDPKVESPVKITLKVTVYMGEGWYYDFKHTHFDQFSPPDFYTRVGIAGVPHDTVMKKTKAVEDNWLPSWNEVFEFPLSIPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSQKGDKYNNVKLLMRFEFI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1572 589 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 589 - -
Lal17g1572 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 106 250 - -
Lal17g1572 589 CDD PI-PLCc_plant 105 428 - -
Lal17g1572 589 Gene3D - 22 101 - -
Lal17g1572 589 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 453 IPR017946 GO:0006629|GO:0008081
Lal17g1572 589 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 69 IPR015359 -
Lal17g1572 589 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal17g1572 589 SMART C2_3c 461 569 IPR000008 -
Lal17g1572 589 MobiDBLite consensus disorder prediction 256 319 - -
Lal17g1572 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal17g1572 589 MobiDBLite consensus disorder prediction 256 284 - -
Lal17g1572 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 588 IPR035892 -
Lal17g1572 589 Pfam C2 domain 462 563 IPR000008 -
Lal17g1572 589 SMART plcx_3 106 250 IPR000909 -
Lal17g1572 589 PRINTS Phospholipase C signature 111 129 IPR001192 GO:0035556
Lal17g1572 589 PRINTS Phospholipase C signature 137 157 IPR001192 GO:0035556
Lal17g1572 589 PRINTS Phospholipase C signature 234 251 IPR001192 GO:0035556
Lal17g1572 589 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Lal17g1572 589 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Lal17g1572 589 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Lal17g1572 589 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 589 IPR001192 GO:0035556
Lal17g1572 589 SUPERFAMILY PLC-like phosphodiesterases 106 442 IPR017946 GO:0006629|GO:0008081
Lal17g1572 589 Pfam Phosphatidylinositol-specific phospholipase C, X domain 108 250 IPR000909 -
Lal17g1572 589 Gene3D C2 domain 454 589 IPR035892 -
Lal17g1572 589 SMART plcy_3 324 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal17g1572 589 CDD C2_PLC_like 459 588 - -
Lal17g1572 589 ProSiteProfiles C2 domain profile. 442 571 IPR000008 -
Lal17g1572 589 SUPERFAMILY EF-hand 16 102 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1572 Lal-Chr17 17133247 17138214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1572 1 589 Acyl Lipid Metabolism Gene Families AT3G55940 67.677 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1572 K05857 - gmx:100784534 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0224 22 1382403 1386172 Lal17g1572 17 17133247 17138214 ECH
Lal22g0359 22 2312828 2317264 Lal17g1572 17 17133247 17138214 ECH
Lal17g1572 17 17133247 17138214 Lal17g1572 17 17133247 17138214 ECH
Lal4g1578 4 19963344 19969113 Lal17g1572 17 17133247 17138214 LSH
Lal17g1572 17 17133247 17138214 Lal22g0223 22 1374910 1381715 PCT
Lal17g1572 17 17133247 17138214 Lal6g0238 6 1567257 1570735 PCT
Lal22g0223 22 1374910 1381715 Lal17g1572 17 17133247 17138214 PCT
Lal6g0238 6 1567257 1570735 Lal17g1572 17 17133247 17138214 PCT