Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1578 ATGGCAACCCATAACTACCAAATCTTCAGTTGTTTCAATAGGAAGTTCACCATTACCCAACCTGGCCCTCCTTCCGATATCAAACAAACCTTCTCTCTCTTCTCCGCCGGCAACTCCTCCTTCTCCGCCGATCACCTCCGCCACTTCCTCTCCGACCACCAACTCGAGGACCCTCATATCATTCACACTATCCTCCAATCTCTGAAACATGATCATGAAACTGATATAGAAGGAATTAGCGTTGATGAGTTCTTCAATCTCTTGTTACATGATCATCAATTCAGTAGTCCCTTGAATTCCCAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACAGGACACAATTCCTATCTGACTGGGAATCAACTGAGCAGTGACTGCAGTGATTTGCCGATCATTAAGGCTTTGCAACTAGGCGTGCGAGTAATCGAACTAGATTTATGGCCGAACTCAACTGAAGATGATATCGATGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTTAAGCAATGTTTCAAGTCCATTAAACAATATGCTTTTGTTAAATCACCTTACCCGGTCATTATAACCTTTGAAGACCACCTTACTCCAGATCTTCAAGCTAAAGTTGCCGAGATGACAATTCAAATATTTGGAGATTTGCTTTATTATCCTGAGACAGATTATCAGACAGAGTTCCCGACACCAGAATCATTGAAAGGTCGAATCCTTATATCGACCAAACCACCGAAAGAATATCTCGAATCCAATCAAAGTAAAGACAAGGACAGTGAAACGGAATTAGCTGACAAAGTATCATCATCGCTGGATCCTACTAATGAATTGGACACGGATGACCGGGTTGCACCTGAGTACAAAAACTTGATTACAATCCATGCTGGAAAACCAAAGGGTGATGATGTACAGGATGACTTGAAAGTTGATGGTCAAGTTAAACGCTTAAGCTTGAGCGAACAGAAACTTGAAAAGGCTTCTGAATCTAATGGACCTGACATTGTTAGGTTTACGCAGAAGAATATCCTCAGAGTGTATCCAAAGGGAACACGCATTACGTCGTCAAATTACAGGCCACACATTGGGTGGATGTATGGGGCTCAGATGGTTGCACTTAACATGCAGGGACATGGCAAATCACTCTGGTACATGCAAGGGATGTTTAGTGCAAATGGTGGGTGTGGTTATGTGAAAAAGCCCGACTTTCTACTTGAAAAAGGACCGCATAATGAGGTTTTTGATCCTAAAAGAACATTGCCAGTGTTGAAGACATTAAAGGTAAAACTCTACATGGGAACCGGATGGAGCACAGATTTCGATCAATCACACTTCGATACATACTCACCACCAGACTTTTACACTAAGATTGGTATTGTTGGAGTACCTGCTGATAAAGGCAAGAAGAAAACAAAAGTGATTTCAAATAATTGGTTTCCGGTGTGGGACGAAGAGTTTGAGTTCCCTTTAACTGTTCCAGATTTGGCTTTGCTTCGTATACAAGTTAAAGAGCATGATACCGAAAAAGATGACTTTGGTGGACAAACTTGTTTGCCAGTTTCTGAACTGAAACAAGGATTCAGGTCAGTACATCTCTATGATGAAGAGGGACAGAAATTAAAATCTGTGAAGCTCTTAATGAGGTTTCAGTTCATATGA 1671 0.4129 MATHNYQIFSCFNRKFTITQPGPPSDIKQTFSLFSAGNSSFSADHLRHFLSDHQLEDPHIIHTILQSLKHDHETDIEGISVDEFFNLLLHDHQFSSPLNSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDLPIIKALQLGVRVIELDLWPNSTEDDIDVVHGRTLTTPVSLKQCFKSIKQYAFVKSPYPVIITFEDHLTPDLQAKVAEMTIQIFGDLLYYPETDYQTEFPTPESLKGRILISTKPPKEYLESNQSKDKDSETELADKVSSSLDPTNELDTDDRVAPEYKNLITIHAGKPKGDDVQDDLKVDGQVKRLSLSEQKLEKASESNGPDIVRFTQKNILRVYPKGTRITSSNYRPHIGWMYGAQMVALNMQGHGKSLWYMQGMFSANGGCGYVKKPDFLLEKGPHNEVFDPKRTLPVLKTLKVKLYMGTGWSTDFDQSHFDTYSPPDFYTKIGIVGVPADKGKKKTKVISNNWFPVWDEEFEFPLTVPDLALLRIQVKEHDTEKDDFGGQTCLPVSELKQGFRSVHLYDEEGQKLKSVKLLMRFQFI 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1578 556 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 2 556 - -
Lal4g1578 556 Pfam C2 domain 452 535 IPR000008 -
Lal4g1578 556 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 429 555 IPR035892 -
Lal4g1578 556 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 421 IPR017946 GO:0006629|GO:0008081
Lal4g1578 556 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 322 408 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal4g1578 556 MobiDBLite consensus disorder prediction 254 270 - -
Lal4g1578 556 MobiDBLite consensus disorder prediction 250 288 - -
Lal4g1578 556 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 556 IPR001192 GO:0035556
Lal4g1578 556 Pfam Phosphatidylinositol-specific phospholipase C, X domain 106 248 IPR000909 -
Lal4g1578 556 SUPERFAMILY PLC-like phosphodiesterases 104 410 IPR017946 GO:0006629|GO:0008081
Lal4g1578 556 SMART plcy_3 292 409 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal4g1578 556 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 104 248 - -
Lal4g1578 556 PRINTS Phospholipase C signature 109 127 IPR001192 GO:0035556
Lal4g1578 556 PRINTS Phospholipase C signature 135 155 IPR001192 GO:0035556
Lal4g1578 556 PRINTS Phospholipase C signature 232 249 IPR001192 GO:0035556
Lal4g1578 556 PRINTS Phospholipase C signature 347 368 IPR001192 GO:0035556
Lal4g1578 556 PRINTS Phospholipase C signature 368 386 IPR001192 GO:0035556
Lal4g1578 556 PRINTS Phospholipase C signature 522 532 IPR001192 GO:0035556
Lal4g1578 556 SMART C2_3c 429 536 IPR000008 -
Lal4g1578 556 Gene3D C2 domain 426 556 IPR035892 -
Lal4g1578 556 CDD C2_PLC_like 428 555 - -
Lal4g1578 556 ProSiteProfiles C2 domain profile. 410 538 IPR000008 -
Lal4g1578 556 SUPERFAMILY EF-hand 6 106 IPR011992 -
Lal4g1578 556 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 321 407 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal4g1578 556 SMART plcx_3 104 248 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1578 Lal-Chr4 19963344 19969113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1578 2 555 Acyl Lipid Metabolism Gene Families AT2G40116 58.000 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1578 K05857 - gmx:100786997 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1578 4 19963344 19969113 Lal4g1578 4 19963344 19969113 ECH
Lal4g1578 4 19963344 19969113 Lal17g1572 17 17133247 17138214 LSH
Lal4g1578 4 19963344 19969113 Lal22g0223 22 1374910 1381715 PCT
Lal4g1578 4 19963344 19969113 Lal6g0238 6 1567257 1570735 PCT
Lal22g0223 22 1374910 1381715 Lal4g1578 4 19963344 19969113 PCT
Lal6g0238 6 1567257 1570735 Lal4g1578 4 19963344 19969113 PCT