Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0223 ATGTCCAAACAAACATACAGTGTCTGCTTCTGTTGTCGCCGCCGCTTCAAACTCGCCTTGGCAGAGGCGCCACCGGAGATCAAGACCCTTTTCGATACTTACTCAGAGAATGATCTTATGTCACCTTCTCAACTTCAAAGGTTCCTTTTTCATGTCCAGAAACAAGAGAAAGCTACCATAGAAGATGCTCAAGCCATTATCGATTCTCTCAAGCATTTCCATCGCAAGGGTCTAAACCTTGAAAGTTTCTTCAAGTACCTCTTCAGTGATACTAACCTTCCTATTCTTCCTTCTCTTGGGGTGCACCATGATATGACTTTACCCTTGTCTCATTATTTCATATATACTGGCCATAATTCCTATCTAACTGGAAATCAGCTTAGCAGCGATTGCAGTGATGTACCCATCATAAATGCACTGAAGAGAGGTGTTAGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAAGATAATGTGGATGTTCTTCATGGAAGGACATTCACTACTCCTGTGGAGCTTATAAGGTGTTTGGGGGCTATCAAGGAACATGCATTTGATGCATCAGAATATCCAGTTGTAATAACCCTAGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCCGAGATGGTTGCTCAAACATTTGGAGACATGCTATTTTCTCCTAGTACAGAAAGCCCGAAGGAATTCCCTTCTCCTGAATCACTTAAGAATAGGATTATTATATCAACCAAACCACCAAAGGAGTACCTTGAGGCAAAAGAAATAAAGGAAAAGGGGGATGATTCACAGGCTTCAGGCAATGAAGAAGCTTGGGGGAAAGAATTCCCAAGCATGAAACATGTAACTATAGATTTCAAGGACAACAAAATGGATGAAGAAGATCTTAATGATGAGGAAGATAGTGATGAATCAGATAAGTCACATCATAATGAAGCACCAGAGTATAGAAGTTTAATTGCAATTCATGCTGGAAAGCCTAAAGGTGGAATAACTGAATGGCTAAAAGTAGATCCTGATAAAGTTAGACGTCTGAGTTTAAGTGAGCAACATCTTGAAAAGGCTGCAATAACTCTTGGCAAAGACATTGTCAGGTTTACTCAGCGGAATATATTGAGGGTATATCCAAAAAGTACTCGCATTACGTCCTCAAATTATAACCCATTAATTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGGAGACCACTTTGGTTGATGCATGGAATGTTCAAAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTATCTAGTTAAGACTGGCCCAAATAATGAGGTCTTTGATCCGAAAGCTAAGTTACCTGTGAAGACTACTTTAAAGGTGACTGTATATATGGGCGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATACTCACCTCCAGACTTCTACACAAGAGTGGGTATTGCTGGAGTAGCAGATGATAATGTAATGAAAAAAACGAAGACGATCGAGGATAATTGGTTGCCTACTTGGAATGAGGTATTCGAGTTCCCACTTACTGCTCCAGAATTGGCGCTGCTTCGCATAGAAGTTCATGAGTATGACATATCTGAGAAGGATGATTTTGGTGGACAAACAGTCCTACCTGTTTGGGAGCTAAGAAGTGGAATTCGAGCTGTTCCACTGTATAGCCACAAGGGAGAAAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTTATTGA 1752 0.4064 MSKQTYSVCFCCRRRFKLALAEAPPEIKTLFDTYSENDLMSPSQLQRFLFHVQKQEKATIEDAQAIIDSLKHFHRKGLNLESFFKYLFSDTNLPILPSLGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNVDVLHGRTFTTPVELIRCLGAIKEHAFDASEYPVVITLEDHLTPDLQAKVAEMVAQTFGDMLFSPSTESPKEFPSPESLKNRIIISTKPPKEYLEAKEIKEKGDDSQASGNEEAWGKEFPSMKHVTIDFKDNKMDEEDLNDEEDSDESDKSHHNEAPEYRSLIAIHAGKPKGGITEWLKVDPDKVRRLSLSEQHLEKAAITLGKDIVRFTQRNILRVYPKSTRITSSNYNPLIGWMHGAQMVAFNMQGYGRPLWLMHGMFKANGGCGYVKKPDYLVKTGPNNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVADDNVMKKTKTIEDNWLPTWNEVFEFPLTAPELALLRIEVHEYDISEKDDFGGQTVLPVWELRSGIRAVPLYSHKGEKYNSVKLLMRFEFY 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0223 583 SMART C2_3c 455 563 IPR000008 -
Lal22g0223 583 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 89 IPR015359 -
Lal22g0223 583 SUPERFAMILY PLC-like phosphodiesterases 103 436 IPR017946 GO:0006629|GO:0008081
Lal22g0223 583 Gene3D - 21 97 - -
Lal22g0223 583 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 103 247 - -
Lal22g0223 583 ProSiteProfiles C2 domain profile. 436 565 IPR000008 -
Lal22g0223 583 Pfam C2 domain 456 557 IPR000008 -
Lal22g0223 583 Gene3D C2 domain 450 583 IPR035892 -
Lal22g0223 583 MobiDBLite consensus disorder prediction 286 318 - -
Lal22g0223 583 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 348 434 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal22g0223 583 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 347 432 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal22g0223 583 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 455 582 IPR035892 -
Lal22g0223 583 PRINTS Phospholipase C signature 108 126 IPR001192 GO:0035556
Lal22g0223 583 PRINTS Phospholipase C signature 134 154 IPR001192 GO:0035556
Lal22g0223 583 PRINTS Phospholipase C signature 231 248 IPR001192 GO:0035556
Lal22g0223 583 PRINTS Phospholipase C signature 373 394 IPR001192 GO:0035556
Lal22g0223 583 PRINTS Phospholipase C signature 394 412 IPR001192 GO:0035556
Lal22g0223 583 PRINTS Phospholipase C signature 549 559 IPR001192 GO:0035556
Lal22g0223 583 SMART plcy_3 318 435 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lal22g0223 583 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 582 IPR001192 GO:0035556
Lal22g0223 583 Pfam Phosphatidylinositol-specific phospholipase C, X domain 105 247 IPR000909 -
Lal22g0223 583 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 582 - -
Lal22g0223 583 CDD C2_PLC_like 453 583 - -
Lal22g0223 583 SMART plcx_3 103 247 IPR000909 -
Lal22g0223 583 SUPERFAMILY EF-hand 17 104 IPR011992 -
Lal22g0223 583 Gene3D Phosphatidylinositol (PI) phosphodiesterase 99 448 IPR017946 GO:0006629|GO:0008081
Lal22g0223 583 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0223 Lal-Chr22 1374910 1381715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0223 1 582 Acyl Lipid Metabolism Gene Families AT3G55940 68.571 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0223 K05857 - gmx:547864 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0223 22 1374910 1381715 Lal22g0223 22 1374910 1381715 ECH
Lal22g0223 22 1374910 1381715 Lal6g0238 6 1567257 1570735 LSH
Lal4g1578 4 19963344 19969113 Lal22g0223 22 1374910 1381715 PCT
Lal17g1572 17 17133247 17138214 Lal22g0223 22 1374910 1381715 PCT
Lal22g0223 22 1374910 1381715 Lal4g1578 4 19963344 19969113 PCT
Lal22g0223 22 1374910 1381715 Lal17g1572 17 17133247 17138214 PCT