Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00553 ATGGTCTTGCAGAAGAGGTTAGAGTACGGGTTTAATGGCTATCAGACTCCAGCCATGCTGAGGGCTAAATTTCAAAGAGCAGAAGACAACCAAAAGTGTGCATTTGAATTATTGGCCACCGTAGCTGGTAAACTATTGCAAGAGAGAGAGAATCCAACCATGTCTAGTGATACATCATCAGAAAAGGATCAGTCTGGATTTGTCAAAGAGTGCCAAGATGCAAATAAACCATCCAAATCTGTGATTTCTGATGAAGGAAGTTGTGACAAAAGTGGTTTCTCTCGTCTTTCTTCACAAACAAACAACAAAAATTGTGGTTTGAAAGAATTCCCACATCTTGCAATTGATGGTGATGCAGGGACTGCTTCTATAGTAACAAGTTCTACTTACTTACAAGGGTTCATTGCAGAGAAATTGGTGGATGGAAATAGCCATTTCAAAGTGGAAAACGTTACTAGCACAGTTAATTTAGATTCTTCTGATTATCCAAAGCATAGTAATTTCAAGTTACACGGTGATACAAGTAAAGGAAAGGATGAGTTGCATAAGTTTGAGAAGGTGCCAATTGGTAGTGGGATTGACATGTGTAGTTTTGAGGACCCTTTGGATGAAAATCCTCCTGCATTGATCAGTTTAGGTGGCAATGCCAAATTGTCTGGGTATAATGATAGGATTCCCTGTAGCTTGTTGTCCAAAAGTCGTGACAATGTACCAGTAGTTAGTAGAGATGATGATGAAAACTCTTATGGGTGTACTCACCCTATTAATACTAAAACCAAGTCCTTTAGGCTAAAGACTGGTATAGGTGATAATAGAATAAGTAAAAGACTGGCTTCTAACTTTCAGAAAGTTGCTGAAAAAACAAAGGATCATACACATTCTAACAATGATGGAGATTGGAAGCGAACTTACTGCAGCAAGAGGAACTGCAATAAACACCAAAGTTCTCAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAATTATCGCTCTGTTTCAAATTCTAATGGATTGATCAGGAGTGGTGGCATTTATTATTCACCTGAGAATTGTATGAATCAGGACGGTTGTGGTTCACCACCTGGGATGCACAAAGACCCTGGAATGCCATCTTTGGAAGCATGTCAACATCAGACGTTACGAAGTAGAGGTTCTCATGtgaatcttaggatcaagtcatttagagtGCCAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAAAAAGTTAAGGATGACAGTAAAACTCTACTTCAAACCGGAATTTCTCATCAAAACGAGCTGGATGCTTTGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTACCGATTGTATGTGCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAGGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGCCATTTTGAAAACGACCATGATTCAGCACCTTCTCCTGTTAATGCATCTGTTGAGAAAGGTATGAAAGATTCCAAAGAACTGGTTACTGTTCCTGAAATGGATGAGGAACTAGCTATGGTACCTGTACACCAGAAGTCAAAGCGATCTGAGATCATCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGGTGGCGAGATGTTAAGGTTTGTGCTTTTGATAATGCAAAGCATCGGACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAACAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACGCTTATTGGTCCCATCAGCAGACTAAGCCGCAGCACAAGCACCATCCAGAAACTGAAACTGTCTTCTCCTTTTAA 2046 0.4071 MVLQKRLEYGFNGYQTPAMLRAKFQRAEDNQKCAFELLATVAGKLLQERENPTMSSDTSSEKDQSGFVKECQDANKPSKSVISDEGSCDKSGFSRLSSQTNNKNCGLKEFPHLAIDGDAGTASIVTSSTYLQGFIAEKLVDGNSHFKVENVTSTVNLDSSDYPKHSNFKLHGDTSKGKDELHKFEKVPIGSGIDMCSFEDPLDENPPALISLGGNAKLSGYNDRIPCSLLSKSRDNVPVVSRDDDENSYGCTHPINTKTKSFRLKTGIGDNRISKRLASNFQKVAEKTKDHTHSNNDGDWKRTYCSKRNCNKHQSSQMNIPFKKRKLFNYRSVSNSNGLIRSGGIYYSPENCMNQDGCGSPPGMHKDPGMPSLEACQHQTLRSRGSHVNLRIKSFRVPELFIEVPETATIGSLKRTVMDAVTAVLGGELHIGVFLQGKKVKDDSKTLLQTGISHQNELDALGFTLEPNSSQSLPIVCAAHSPGPKADITQPVIRYPSSPAVIHQRIQGNSDMLPEHQVTSLGSHFENDHDSAPSPVNASVEKGMKDSKELVTVPEMDEELAMVPVHQKSKRSEIIQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKVCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLVAHAYWSHQQTKPQHKHHPETETVFSF 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00553 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 575 634 IPR017930 -
Gma12g00553 681 ProSiteProfiles Ubiquitin domain profile. 388 458 IPR000626 GO:0005515
Gma12g00553 681 SMART sant 579 632 IPR001005 -
Gma12g00553 681 Gene3D - 568 672 - -
Gma12g00553 681 SUPERFAMILY Homeodomain-like 581 661 IPR009057 -
Gma12g00553 681 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 676 IPR031105 -
Gma12g00553 681 SUPERFAMILY Ubiquitin-like 383 471 IPR029071 -
Gma12g00553 681 ProSiteProfiles Myb-like domain profile. 580 630 IPR001005 -
Gma12g00553 681 CDD SANT_TRF 581 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00553 Gma-Chr12 4626308 4629990 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00553 - - gmx:100816121 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00553 12 4626308 4629990 Gma12g00553 12 4626308 4629990 ECH
Gma12g00553 12 4626308 4629990 Gma18g00356 18 3057931 3063089 ECH
Gma12g00553 12 4626308 4629990 Gma11g02219 11 37478067 37483327 ECH
Gma11g01255 11 10690299 10695851 Gma12g00553 12 4626308 4629990 ECH
Gma18g01670 18 46880140 46883848 Gma12g00553 12 4626308 4629990 ECH
Gma07g01235 07 16106783 16110213 Gma12g00553 12 4626308 4629990 ECH
Gma12g00553 12 4626308 4629990 Gma11g01255 11 10690299 10695851 GST
Gma15g00355 15 3011029 3015002 Gma12g00553 12 4626308 4629990 PCT
Gma12g00553 12 4626308 4629990 Gma15g00355 15 3011029 3015002 PCT