Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01928 ATGTCGTCCGCTGGCGTCACTACACTCAGTCCACTTCCCAGTGAGCCTTTAATGTCTCCAAGTGGATTCCATTCCCTCTCACACCTGTCTTTGgatgaatcaattttaatatttctgtCCTTTTCGGGGTCTATGACTCCAATACGTGTTTTAGGGTGTGATACCATTGAGTCTGTTAAGCTCAAAATCCAGACATGTAAGGGGTTTGTGGTGAAGAATCAGAAGTTGGTTTGTAGTGGCCGAGAACTTGCGCGAAGCAATTCTCTAATCCGGGATTATGGGGTAGTAGATGGAAATGTTTTGCATTTGGTGCTCAAACTGTCAGAACTTCAGGTCATCAGTGTGAGAACTTCGACTGGGAAGGAGTTTACATTTCATCTGGAACGAGGTAGGGATGTTGGATATGTGAAAAACCAGATTGCCAAAAAGGAGAAACAGTTTGCTGATCCTGAACAGCAGGAAGTTGTGTGTAATGGGGAACGGCTTGAGGACCAGATGCTTATTGATGATATCAGCAAACATAACGATGCAGTGATACATCTTTTGGTCAGAAAATCTGTTAAAGTTCGAGCAAGACAGGTTGAGAAAAATTTTGAGCTGTCCTTTGTAGCAACAGAGTTGAATAATAGGGAAAATTATGATGCTAAGGGAGATATTAATAGGAGAAACTATGGTGTCAGTGACGAAAATACAAGAAGGGAGTACAAAGTCCTTGAAAATATTGTACAGAGAAAGCCTCTCGATAGAAATCTTCTTTTGGAGCCAATTATTATTAACCCCAAAATTGAATTAACTTCAGTTATTTTGGATATGATAAACTCCACTTATGATGGGCTTGATGCGGGAAACAATCCAATCAGATCTGCTGAGGGTACTGGGGGAGCCTATTTTATGCTGGATTCATTTGGGAAAAAGATGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTAAATAATCCTCGAGGTTTGCCTTTGTCAGTAGACGGAGAAGGGTTAAAAAAGGGGACAAGAGTTGGCCAAGGAGCATTCAGGGAAGTTGCAGCCTACATTTTGGATCATCCTATTACAGGGCACCGCACATCATTTGGTGATGACAAGGGCTTTGCAGGGGTTCCGCCAACAATTCTGGTTAAGTGCTTGCACAAAGGGTTTAACCATGTTGGGGACTTGACTCCTAAGATAGGCTCCTTGCAGATGTTCATGGAGAGTAGCGGAAGTTGTGAGGATATGGGTCCAGGGCCTTTCCCAGTTAAGGAAGTACACAAAATCAGTGTGTTGGATATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTTGGCACAGAGAAGGAAAACAACCAGACTGTGCTGATTCCAATTGATCACGGATACTGCTTGCCTGAAAGTTTTGAAGATTGTACCTTTGAATGGCTTAATTGGCCACAAGCTCGGCGGCCATACTCCCAAGAGATTGTTGACTACATCAAGTCACTGGATGCCGAAGAAGACATTGCCCTTCTCAAGTTCCATGGATGGGATTTGCCAGTTGAATGTGCCCGTACTCTTCGGATTTCAACCATGCTTCTGAAGAAAGGAGTTCAGAGAGGGCTCACCTCCTTTGCTATCGGAAGCCTGATGTGCAGGCAATCCATCAACAGGGAGTCTGTGATTGAGGAAATTGTACAAGCAGCAGAAGATTCTGTGCTTCCTGGCACAAGTGAAGCTACATTTCTGGATGCTGTTTCTCAGATCATGGACAAGCACCTTGATGAGATTGCCAGTTCCCGTGCTTA 1787 0.432 MSSAGVTTLSPLPSEPLMSPSGFHSLSHLSLDESILIFLSFSGSMTPIRVLGCDTIESVKLKIQTCKGFVVKNQKLVCSGRELARSNSLIRDYGVVDGNVLHLVLKLSELQVISVRTSTGKEFTFHLERGRDVGYVKNQIAKKEKQFADPEQQEVVCNGERLEDQMLIDDISKHNDAVIHLLVRKSVKVRARQVEKNFELSFVATELNNRENYDAKGDINRRNYGVSDENTRREYKVLENIVQRKPLDRNLLLEPIIINPKIELTSVILDMINSTYDGLDAGNNPIRSAEGTGGAYFMLDSFGKKMSVFKPIDEEPMAVNNPRGLPLSVDGEGLKKGTRVGQGAFREVAAYILDHPITGHRTSFGDDKGFAGVPPTILVKCLHKGFNHVGDLTPKIGSLQMFMESSGSCEDMGPGPFPVKEVHKISVLDIRLANADRHAGNILLGTEKENNQTVLIPIDHGYCLPESFEDCTFEWLNWPQARRPYSQEIVDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVQRGLTSFAIGSLMCRQSINRESVIEEIVQAAEDSVLPGTSEATFLDAVSQIMDKHLDEIASSRA 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01928 595 Gene3D - 30 111 - -
Bva08g01928 595 SMART ubq_7 35 106 IPR000626 GO:0005515
Bva08g01928 595 SMART ubq_7 111 184 IPR000626 GO:0005515
Bva08g01928 595 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 574 IPR000403 -
Bva08g01928 595 SUPERFAMILY Ubiquitin-like 36 107 IPR029071 -
Bva08g01928 595 ProSiteProfiles Ubiquitin domain profile. 113 185 IPR000626 GO:0005515
Bva08g01928 595 Gene3D - 112 199 - -
Bva08g01928 595 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 593 IPR044571 -
Bva08g01928 595 SUPERFAMILY Ubiquitin-like 107 185 IPR029071 -
Bva08g01928 595 Pfam Phosphatidylinositol 3- and 4-kinase 291 539 IPR000403 -
Bva08g01928 595 Pfam Ubiquitin family 37 107 IPR000626 GO:0005515
Bva08g01928 595 Pfam Ubiquitin family 113 185 IPR000626 GO:0005515
Bva08g01928 595 SUPERFAMILY Protein kinase-like (PK-like) 425 590 IPR011009 -
Bva08g01928 595 CDD Ubl_ubiquitin_like 113 182 - -
Bva08g01928 595 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 593 - -
Bva08g01928 595 ProSiteProfiles Ubiquitin domain profile. 54 106 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01928 Bva-Chr8 12943896 12946798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01928 1 591 Acyl Lipid Metabolism Gene Families AT5G24240 56.281 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01928 - - gmx:100815111 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01928 08 12943896 12946798 Bva12g01954 12 15501775 15506089 ECH
Bva08g01928 08 12943896 12946798 Bva06g02973 06 18535719 18539741 ECH
Bva08g01928 08 12943896 12946798 Bva08g01928 08 12943896 12946798 ECH
Bva02g02048 02 21353568 21356518 Bva08g01928 08 12943896 12946798 ECH
Bva08g00040 08 227314 231215 Bva08g01928 08 12943896 12946798 ECH
Bva11g02230 11 18048336 18051088 Bva08g01928 08 12943896 12946798 ECH