Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01954 ATGGCTAGTGTGGCACTTATTCCAGTGAATGAAGAATCGTTCAGATCCCACGGTAAATTCACCAGTTGCTATGGTCCTCGCTTGAGGGACTCAATTTTGATTTACCTAGCTGTTGGCAGATCTGTGATTCCTATGCGCATTATGGACACAGACTCAATTGCTTCAGTGAAACTGAGAATTCAGACATTTAGAGGCTTCTTTGTGAAGAAACAGAAGCTGGTTTTTGAAGGGAGGGAATTGGCACGGAATAATTCTTGTATCCGGGATTATGGTGTGACTGATGGGAATGTTTTGCACTTGGTGCTCAGGCTTTCTGATCTTCAAGCTATTACTGTGAGGACCTTGTGCGGGAAAGAGTTCGAGTTTTATGTTGAGAAGAAGAGGAATGTGGGTTATGTGAAGGAGCAGATTACAAGGAAGGGGAATGGGTTGGTGGATCTTAAAGACCAGGAACTGATATGCGATGGTGAGGCACTTGAAGACCAGAGACTCATTGAGGATATCTGTACGGATAATGATGCCGCAATTCACTTGTTGATTAGGCGATCTGCCAAAGTAAGGACTAAGCCAATTCAGAATGATTTTGAATTATCAATTGAATCATCATGCACATATGATAAAGTGGCAAATTTAGGAATAGACCAGTTGGGGTCGTTGTCTGTGACAAAGAAGAGCCCAGAGAGAAAGCAATTAATGagagattttcttttggagcCTATTCTcgttaatttcaaaatcagaCTTCCAGTAATGATCCATGAGCTAATCAAGAATTCTTCTCAGGGATTAGAGAAAGGCAATAAACCAATCCCATCTTCCGAGGGCTCAGGAGGTGCTTATTTCATGCAAGACTCATCTGGTTTAAAGTATGTTTCTGTTTTCAAGCCTATTGATGAGGAGCCAATGGCTGTTAATAACCCTCGAGGACTGCCTGTCTCTGTGAATGGGGAAGGCTTGAAGAAAGGTACACGAGTCGGACAAGGGGCATTGAGAGAGGTTGCAGCTTACATTTTGGATCATCCTAGGAATGGAGCTCGCTCTCATGATAATAATGGGGAGAAGGGATTTGCTGGAGTTCCCCCTACAGTATTGGTCAAATGCTTGCATAAAGGATTCAATCATCCTAAAGGTTATAATTGTGATTCGAGTAATGTCAAAATAGGATCTCTTCAGAAGTTTATGCAGAATATTGGAAGTTGTGAAGACATGGGCCCTCGTGCATTTCCAGTGGCGGAGGTACACAAGATCTCAGTGCTTGATATAAGATTGGCAAATGTAGATAGGCATGCCGGGAACATTTTGATTGGCAGGGATAGTGAAGATGGTCCAATTGTGCTCATACCAATCGATCATGGTTATTGCTTGCCCGAGAATTTTGAAGACTGCACTTTTGATTGGTTATACTGGCCACAAGCTCAGGAGCCTTACTCCCCAGACACCATTGACTATATTAAATCTCTGGATGCCGAAGAAGATATTAAGCTTTTAAAGTTTCATGGATGGGACCTTCCGCCTGAATGTACTCGTGTCTTTCGAATATCAACCATGCTTCTTAAGAAAGGCGCAGAGAGAGGACTAACTCCATTTACCATTGGAAGCATTATGTGCAGGGAAACACTCAAGGAAAAATCTGTCATTGAGCTGATACTTGAAGAAGCAGAGGAAGCTGCACTTCCAGGATCAACCGAAGCTTCATTTCTTGATCTTGTTTCACAGATCATGGATAGTCATTTAGATGAGCTATCCCCATG 1751 0.418 MASVALIPVNEESFRSHGKFTSCYGPRLRDSILIYLAVGRSVIPMRIMDTDSIASVKLRIQTFRGFFVKKQKLVFEGRELARNNSCIRDYGVTDGNVLHLVLRLSDLQAITVRTLCGKEFEFYVEKKRNVGYVKEQITRKGNGLVDLKDQELICDGEALEDQRLIEDICTDNDAAIHLLIRRSAKVRTKPIQNDFELSIESSCTYDKVANLGIDQLGSLSVTKKSPERKQLMRDFLLEPILVNFKIRLPVMIHELIKNSSQGLEKGNKPIPSSEGSGGAYFMQDSSGLKYVSVFKPIDEEPMAVNNPRGLPVSVNGEGLKKGTRVGQGALREVAAYILDHPRNGARSHDNNGEKGFAGVPPTVLVKCLHKGFNHPKGYNCDSSNVKIGSLQKFMQNIGSCEDMGPRAFPVAEVHKISVLDIRLANVDRHAGNILIGRDSEDGPIVLIPIDHGYCLPENFEDCTFDWLYWPQAQEPYSPDTIDYIKSLDAEEDIKLLKFHGWDLPPECTRVFRISTMLLKKGAERGLTPFTIGSIMCRETLKEKSVIELILEEAEEAALPGSTEASFLDLVSQIMDSHLDELSP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01954 583 ProSiteProfiles Ubiquitin domain profile. 108 185 IPR000626 GO:0005515
Bva12g01954 583 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 266 565 IPR000403 -
Bva12g01954 583 SUPERFAMILY Protein kinase-like (PK-like) 419 581 IPR011009 -
Bva12g01954 583 Pfam Ubiquitin family 110 182 IPR000626 GO:0005515
Bva12g01954 583 Pfam Ubiquitin family 42 104 IPR000626 GO:0005515
Bva12g01954 583 Gene3D - 109 197 - -
Bva12g01954 583 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 581 IPR044571 -
Bva12g01954 583 SMART ubq_7 32 103 IPR000626 GO:0005515
Bva12g01954 583 SMART ubq_7 108 181 IPR000626 GO:0005515
Bva12g01954 583 Pfam Phosphatidylinositol 3- and 4-kinase 275 531 IPR000403 -
Bva12g01954 583 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 2 581 - -
Bva12g01954 583 SUPERFAMILY Ubiquitin-like 39 105 IPR029071 -
Bva12g01954 583 ProSiteProfiles Ubiquitin domain profile. 30 103 IPR000626 GO:0005515
Bva12g01954 583 SUPERFAMILY Ubiquitin-like 103 181 IPR029071 -
Bva12g01954 583 Gene3D - 36 107 - -
Bva12g01954 583 CDD Ubl_ubiquitin_like 110 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01954 Bva-Chr12 15501775 15506089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01954 1 582 Acyl Lipid Metabolism Gene Families AT5G24240 62.027 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01954 - - gmx:100812724 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01954 12 15501775 15506089 Bva06g02973 06 18535719 18539741 ECH
Bva02g02048 02 21353568 21356518 Bva12g01954 12 15501775 15506089 ECH
Bva08g01928 08 12943896 12946798 Bva12g01954 12 15501775 15506089 ECH
Bva12g01954 12 15501775 15506089 Bva12g01954 12 15501775 15506089 ECH