Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0295 ATGGGTTTCTTTAACTTGTTCCTTTTTATCATAATCTTTCATGTCTTTGTTACAACACCCATATTCTCACATTCAAATAATAATGAACGTTCATCATCCTCAATCTCAAATTTTCTAGATTTGGCTAAGAGTCCTGAGGTATTTGATTGGATGGTTAGAATCAGAAGAAAGATTCATGAGTACCCAGAATTGCTCTATGAGGAATTTAACACTAGTGAAGTCATAAGAACCGAATTGGACAAAATGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGTGTTATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTATAAGAGCTGATATTGATGGTCTCCCAATCCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGATGGAAAGATGCATGCATGTGCCCATGATGCTCACACTGCTATGCTTCTTGGTGCTGCTAAGATTCTCAAACACCATGAAGATCAGATAAAAAAGGCACCTATTTATATATATACAGGGCACCGTTGTTGTTGTTTTTCAACCAGCGGAGGAAGGAGGAGCAGGGGCAAAGAAAGTGTTAGAGGCATCTTTGGATTGCACTTGGTACCTACATTACCCTTAGGACACGTGGCATCTAAGCCTGCTATGCCTCACTTGTCCATTGATCCCCTTCTGGCAGCTTCTAGTGCCATTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCCGATCCTCTTGATCCCCAGGTAGTTACAGTTGCTAATTTCCATGGAGATGGTGCATTCAACGTTATTCCAGATTCTGTTACTATTGGAGGAACTTTCCGAGCTTTTTCACCTGAAAGCATCACACGTTTGAAAGAGCGCATTCAACAGGTAATCACCGGAGTAGCGACCGTTCATAGGTGTACTGCGGAGGTTGATTTCCAAGAAGAACAGAAACCATTCTATCCGGCAACCATAAACGATGAGAAGTTGCATGAGCATTTTCTTGAAGTGGCCAAAAATGTTGTTGGAAACGAGAATGTTTATGAGACACAACCTGTAACGGTATCTGAAGACTTCGCATTCTATCAAGAGGTTATACCTGGTTACTTCTTCATGCTTGGATTCAAAAGTCTCACTTCAGTTGAACCACTTCCAATGTTGCACTCACCACATTTCACCGTCAATGAAGATGCTTTTCCCTATGGTGCTGCTCTTCATGCTTCCTTAGCTACTACTTTTCTTCTCAACCTTGATGATGGAGGGAAATGTCATGATGAAAGAAAGATTCATGAGTACCCAGAATTGTCCTATGAGGAATTTAAGACTAGTGAGGTTATAAGAGCAGAGTTGGACAAAATGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGTGTTATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTTTAAGAGCTGATATTGATGGTCTCCCAATCCAGGAAATGGTGGAGTGGGAACACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGCCATGATGCTCACACTGCTATGGTTCTTGGTGCTGCTAAGATTCTCAAACAACATGAAGATCAGATTAAAGGTACCGTTGTTCTTGTTTTTCAACCAGCAGAGGAAGGAGGGGGAGGGGCAAAGAGAGTCTTAGAGGCAGGAGTATTAGACAAAGTGTCAGCCATCTTTGGATTGCACGTGGCGCCGGTACGTGAATTACCCGTAGGACACGTGGCATCTAAGGCTGGTCCATTATTGGCAGGAACTGCAATGTTTGATGCAACTATACATGGAAAGGGAGGCCATGCAGCTATGCCTCACTTCGCCATTGATCCTGTTTTGGCAGCTTCTAGTGCTGTTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCTGATCCTCTTGATCCCCAGGTCCTCACGGTTGCCAATTTCCATGCAGATGGTGCATACAACGTTATTCCAGATTCTGTCACTTTTGGAGGAACCATCCGAGCTTTATTACCTGAAAGCATCGCGCGTTTGAAGGAGCGCATTCACCAGGTGCACCGCGGAAGTCAACTTCCACGAACCGTCTATCCAGCAACCATAAACGACGACAAGTTGCATGAGCATTTTCTTGAAGTGGCCAAGAATGTTGTTGGAAACAATAATGTTCATGGGATGGAACCTGTAACAGTATCTGAAGACTTCTCATTCTATCAGGAGGCTTTACCTGGTTACTTCTTCATGCTTGGAATGCAGAGTCTCACTGGTGAACCACTACAATCGTTGCATTCACCACATTTCACTGTCAGTGAAGATGCTTTACCCTATGTAACTATCTCTGCTTTAAGTAATTTGAACTTGCATTTTCTCTTTTCACACACAAATCCGTTCCTTATGGGTTCCTTCAACTTGTTTTGTTTCTTCATCATCATCTTTCACGTCTTTGTTGCAACACCCATATTCTCACATTCATCATCGTCAATCTCCACAAAATTTCTAGATTTGGCTAAGAGTCCTGAGGTATTTGATTGGATGGTTAGGATTAGAAGGAAGATTCATGAGTACCCGGAATTGCTATATGAGGAATTTAAGACGAGTGAGGTCATAAGAGCAGAGTTGGACAAAATGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGCGTTATTGGATACATCGGAACTGGAAAACCTCCTTTTGTTGCTTTAAGAGCTGATATTGATGGTCTCCCAATCCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGATGGAAAGATGCATGCTTGTGGTCATGATGCTCACACTGCTATGGTCCTTGGTGCTGCAAAGATTCTCAAACACCATGAAGATCAGATTAAAGGCACAGTTGTTCTTGTTTTTCAACCAGCAGAGGAAGGAGGAGCAGGGGCAAAGAGAATCTTAGAGGCAGGAGTACTAGACAAAGTCTCTGCCATCTTTGGATTACACGTGGCGCCGGCACATGACTTACCCGTAGGACACGTGGCATCTAAGGCTGGTCCATTATTGGCAGGAAGTGGAATGTTTGATGCAACTATACATGGAAAGGGAGGCCATGCAGCTATGCCTCACTTCGCCATTGATCCCGTTTTAGCAGCTTCTAGTGCTGTTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCCGATCCTCTTGATCCCCAGGTAGTTACGGTTACTAATTTCCATGGAGATGGTGCATTCAACGTCATTCCAGATTCTGTTACTATTGGAGGAACCTTCCGAGCTTTTTCGCCCGAAAGCATCACGCGTTTGAAGGACCGCATTCACCAGGTTATCACCGGACAAGCGGCAGTCCATAGGTGCACAGCGGAGGTCGACTTCCATGAAGATAAGAAACCGTTGTATCCAGCAACCATAAACGACGACAAGTTACATGAGCATTTTCTTGAAGTGGCCAAGAATGTTGTTGGAAACAAGAATGTTCATGAGATGCAACCTGTGACAGTATCCGAAGACTTCTCATTCTATCAAGAAGCTTTACCTGGTTACTTCTTCATGCTTGGAATGAAAAGTCACTCTGGTGAACCACTTGCAACGTTGCACTCACCACATTTCACAGTGAATGAAGATGCTTTACCCTATGGTGCTGCCCTTCATGCTTCGTTAGCTACTACTTATCTTCTAAACCATGATGGAGCCAACAAGGTGGGAGGGAAATATCATGATGAGTTATAG 3687 0.4337 MGFFNLFLFIIIFHVFVTTPIFSHSNNNERSSSSISNFLDLAKSPEVFDWMVRIRRKIHEYPELLYEEFNTSEVIRTELDKMGISYKHPVAETGVIGYIGTRKPPFVAIRADIDGLPIQEMVEWEHKSKVDGKMHACAHDAHTAMLLGAAKILKHHEDQIKKAPIYIYTGHRCCCFSTSGGRRSRGKESVRGIFGLHLVPTLPLGHVASKPAMPHLSIDPLLAASSAIVNLQQLVSREADPLDPQVVTVANFHGDGAFNVIPDSVTIGGTFRAFSPESITRLKERIQQVITGVATVHRCTAEVDFQEEQKPFYPATINDEKLHEHFLEVAKNVVGNENVYETQPVTVSEDFAFYQEVIPGYFFMLGFKSLTSVEPLPMLHSPHFTVNEDAFPYGAALHASLATTFLLNLDDGGKCHDERKIHEYPELSYEEFKTSEVIRAELDKMGISYKHPVAETGVIGYIGTRKPPFVALRADIDGLPIQEMVEWEHKSKVPGKMHACGHDAHTAMVLGAAKILKQHEDQIKGTVVLVFQPAEEGGGGAKRVLEAGVLDKVSAIFGLHVAPVRELPVGHVASKAGPLLAGTAMFDATIHGKGGHAAMPHFAIDPVLAASSAVVNLQQLVSREADPLDPQVLTVANFHADGAYNVIPDSVTFGGTIRALLPESIARLKERIHQVHRGSQLPRTVYPATINDDKLHEHFLEVAKNVVGNNNVHGMEPVTVSEDFSFYQEALPGYFFMLGMQSLTGEPLQSLHSPHFTVSEDALPYVTISALSNLNLHFLFSHTNPFLMGSFNLFCFFIIIFHVFVATPIFSHSSSSISTKFLDLAKSPEVFDWMVRIRRKIHEYPELLYEEFKTSEVIRAELDKMGISYKHPVAETGVIGYIGTGKPPFVALRADIDGLPIQEMVEWEHKSKVDGKMHACGHDAHTAMVLGAAKILKHHEDQIKGTVVLVFQPAEEGGAGAKRILEAGVLDKVSAIFGLHVAPAHDLPVGHVASKAGPLLAGSGMFDATIHGKGGHAAMPHFAIDPVLAASSAVVNLQQLVSREADPLDPQVVTVTNFHGDGAFNVIPDSVTIGGTFRAFSPESITRLKDRIHQVITGQAAVHRCTAEVDFHEDKKPLYPATINDDKLHEHFLEVAKNVVGNKNVHEMQPVTVSEDFSFYQEALPGYFFMLGMKSHSGEPLATLHSPHFTVNEDALPYGAALHASLATTYLLNHDGANKVGGKYHDEL* 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0295 1228 SUPERFAMILY Zn-dependent exopeptidases 829 1213 - -
Amo09g0295 1228 Gene3D - 581 686 - -
Amo09g0295 1228 Gene3D - 1001 1119 - -
Amo09g0295 1228 PANTHER AUXIN CONJUGATE HYDROLASE 794 1228 - -
Amo09g0295 1228 PANTHER AUXIN CONJUGATE HYDROLASE 418 767 - -
Amo09g0295 1228 CDD M20_IAA_Hyd 834 1211 IPR044757 GO:0009850|GO:0016787
Amo09g0295 1228 SUPERFAMILY Bacterial exopeptidase dimerisation domain 1002 1111 IPR036264 -
Amo09g0295 1228 SUPERFAMILY Zn-dependent exopeptidases 419 766 - -
Amo09g0295 1228 SUPERFAMILY Zn-dependent exopeptidases 46 407 - -
Amo09g0295 1228 Gene3D Zn peptidases 419 763 - -
Amo09g0295 1228 PANTHER PEPTIDASE M20 FAMILY MEMBER 794 1228 IPR017439 GO:0016787
Amo09g0295 1228 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 410 IPR017439 GO:0016787
Amo09g0295 1228 Gene3D Zn peptidases 51 399 - -
Amo09g0295 1228 TIGRFAM amidohydrolases: amidohydrolase 834 1198 IPR017439 GO:0016787
Amo09g0295 1228 TIGRFAM amidohydrolases: amidohydrolase 419 764 IPR017439 GO:0016787
Amo09g0295 1228 PANTHER PEPTIDASE M20 FAMILY MEMBER 418 767 IPR017439 GO:0016787
Amo09g0295 1228 Pfam Peptidase family M20/M25/M40 891 1207 IPR002933 GO:0016787
Amo09g0295 1228 PANTHER AUXIN CONJUGATE HYDROLASE 1 410 - -
Amo09g0295 1228 Pfam Peptidase family M20/M25/M40 108 402 IPR002933 GO:0016787
Amo09g0295 1228 SUPERFAMILY Bacterial exopeptidase dimerisation domain 212 306 IPR036264 -
Amo09g0295 1228 Gene3D - 213 314 - -
Amo09g0295 1228 Pfam Peptidase dimerisation domain 582 675 IPR011650 -
Amo09g0295 1228 Pfam Peptidase dimerisation domain 207 291 IPR011650 -
Amo09g0295 1228 Pfam Peptidase dimerisation domain 1002 1099 IPR011650 -
Amo09g0295 1228 SUPERFAMILY Bacterial exopeptidase dimerisation domain 582 678 IPR036264 -
Amo09g0295 1228 Pfam Peptidase family M20/M25/M40 471 763 IPR002933 GO:0016787
Amo09g0295 1228 Gene3D Zn peptidases 834 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0295 Amo-Chr9 3365688 3401097 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0295 K21604 K14664 gmx:100794121 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0403 19 5299792 5303138 Amo09g0295 09 3365688 3401097 hybridization
Amo19g0411 19 5438798 5448403 Amo09g0295 09 3365688 3401097 hybridization
Amo19g0411 19 5438798 5448403 Amo09g0295 09 3365688 3401097 PCT
Amo09g0293 09 3338853 3348095 Amo09g0295 09 3365688 3401097 PCT
Amo09g0295 09 3365688 3401097 Amo19g0406 19 5313224 5344632 PCT
Amo09g0295 09 3365688 3401097 Amo09g0296 09 3403440 3406722 PCT
Amo09g0295 09 3365688 3401097 Amo19g0411 19 5438798 5448403 PCT
Amo09g0295 09 3365688 3401097 Amo09g0293 09 3338853 3348095 PCT
Amo19g0406 19 5313224 5344632 Amo09g0295 09 3365688 3401097 PCT
Amo09g0296 09 3403440 3406722 Amo09g0295 09 3365688 3401097 PCT