Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0296 ATGGTGAACATCAGGAGGAAGATTCATGAGAATCCGGAATTGGGGTATCAGGAATTTGAAACCAGTGAGGTCATAAGAGCAGAGTTGGACAAATTGGGAATTTCATATAAGCATCCAATTGCTGAAACCGGTGTCATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTCTAAGAGCTGACATGGATGCTCTTGCTTTACAGGAAATGGTGGATTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCACGCATGTGGTCATGATGCTCATGTTGCTATGCTTCTCGGTGCTGCAATGATCCTCAAACAAAATGAAAATGAGATAAAAGGAACTGTTATTCTTGTTTTCCAACCGGCTGAGGAAGGGGGTGCAGGGGCTAAGAAAATTGTAGAATCCGGAGTCTTAGAAAATGTTAATGCTATCTTTGGATTGCATATCACAGGAAAGTTTCTAATAGGCGAAGTAGCTTCTCGGTCTGGTCTCATGTATGCAAATTCTGGTTTCTTTGAAGCAATGATAAGTGGAAAGGGTGGTCATGCAGCTATTCCTCAACATTCTATAGACCCCATATTGGCAGCTTCTAATGTAATTGTTAGCTTACAGCACCTTATTTCGCGCGAAGCTGATCCTCTTGACTCCCAGGTTGTGACAGTAGGAAAAGTCGAAGGAGGCAGCGCGTTCAATATTATTCCCGATGCTGTCACGATTGGTGGCACCTTCCGGGCATTTTCAAAAGAAGGCTTCAAGCAACTGCAGCAGCGTATTGAGCAGGTTATTATTGGCCAAGCCATCGTCCATAGGTGTAACGCAACAGTAGACTTCCTTCAAGAAGAGAAACCTTTCTACCCTGCAACCATAAACAATGGTGACTTGCACAAGCATTTTCTTGACATTGTCACAAAGTCTCTTGGCATCCAAAAATTTAATGAGATGCGACCGTCAATGGGAGCCGAAGACTTCTCGTTCTATCAAGATGTTATACCTGGATACTACTTCGTGCTTGGAATGCAGAACGCGTCGCATGAACGGCTTGCCGGCGCACACTCACCTTATTATAAAGTCAATGAAGATGCACTTCCTTTAGGAGCTGCACTTCATGCATCCTTGGCTTCTACTTACCTTCTAAAACTTCAGCAGGATATACCTCTTGTAGAGGGTAAATATCATGATGAGTTGTAA 1185 0.4338 MVNIRRKIHENPELGYQEFETSEVIRAELDKLGISYKHPIAETGVIGYIGTRKPPFVALRADMDALALQEMVDWEHKSKVPGKMHACGHDAHVAMLLGAAMILKQNENEIKGTVILVFQPAEEGGAGAKKIVESGVLENVNAIFGLHITGKFLIGEVASRSGLMYANSGFFEAMISGKGGHAAIPQHSIDPILAASNVIVSLQHLISREADPLDSQVVTVGKVEGGSAFNIIPDAVTIGGTFRAFSKEGFKQLQQRIEQVIIGQAIVHRCNATVDFLQEEKPFYPATINNGDLHKHFLDIVTKSLGIQKFNEMRPSMGAEDFSFYQDVIPGYYFVLGMQNASHERLAGAHSPYYKVNEDALPLGAALHASLASTYLLKLQQDIPLVEGKYHDEL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0296 394 Gene3D Zn peptidases 1 361 - -
Amo09g0296 394 Pfam Peptidase family M20/M25/M40 58 372 IPR002933 GO:0016787
Amo09g0296 394 Gene3D - 166 284 - -
Amo09g0296 394 SUPERFAMILY Zn-dependent exopeptidases 1 376 - -
Amo09g0296 394 CDD M20_IAA_Hyd 1 376 IPR044757 GO:0009850|GO:0016787
Amo09g0296 394 SUPERFAMILY Bacterial exopeptidase dimerisation domain 170 277 IPR036264 -
Amo09g0296 394 PIRSF Amidohydrol_AmhX 1 380 IPR017439 GO:0016787
Amo09g0296 394 PANTHER AUXIN CONJUGATE HYDROLASE 1 394 - -
Amo09g0296 394 TIGRFAM amidohydrolases: amidohydrolase 1 364 IPR017439 GO:0016787
Amo09g0296 394 Pfam Peptidase dimerisation domain 160 261 IPR011650 -
Amo09g0296 394 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 394 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0296 Amo-Chr9 3403440 3406722 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0296 K21604 - gmx:100794121 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0406 19 5313224 5344632 Amo09g0296 09 3403440 3406722 hybridization
Amo19g0403 19 5299792 5303138 Amo09g0296 09 3403440 3406722 PCT
Amo09g0295 09 3365688 3401097 Amo09g0296 09 3403440 3406722 PCT
Amo09g0296 09 3403440 3406722 Amo19g0403 19 5299792 5303138 PCT
Amo09g0296 09 3403440 3406722 Amo09g0295 09 3365688 3401097 PCT