Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0406 ATGGGTTTCTTTAACTTGTTCCTTTTTATCATAATCTTTCATGTCTTTGTTACAACACCCATATTCTCACATTCAAATAATAATAATGAACGTTCATCATCCTCAATCTCAAATTTTCTAGATTTGGCTAAGAGTCCTGAGGTATTTGATTGGATGGTTAGGATCAGAAGGAAGATTCATGAGTACCCAGAATTGCTCTATGAGGAATTTAACACTAGTGAAGTCATAAGAACCGAATTGGATAATTTGGGAATTTCATATAAGCATCCAGTTGCTGAAACGGGTGTTATTGGATACATTGGAACTGGAAAAGCTCCTTTTGTTGCTTTAAGAGCTGATATTGATGGTCTCCCAATCCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGATGAAAAGATGCATGCTTGTGCCCATGATGCTCACACTGCTATGCTTCTTGGTGCTGCTAAGATTCTCAAACAGCATGAACATCAGATAAAAGGCACCGTGGTTCTTGTTTTTCAACCAGCAGAGGAAGGAGGAGCAGGGGCAAAGAAAGTGTTAGAGGCAGGAGTATTAGACAAAGTTTCAGCCATCTTTGGATTGCACTTGGTACCTACATTACCCTTAGGACACGTGGCATCTAAGCCTGCTATGCCTCACTTGTCCATTGATCCCCTTCTGGCAGCTTCTAGTGCCGTTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCCGATCCTCTTGATCCCCAGGTAGTTACGGTTGCTAATTTCCACGGAGATGGTGCATTCAACGTTATTCCAGATTCTGTCACTATTGGAGGAACTTTCCGAGCTTTTTCACCTGAAAGCATCACACGTTTGAAAGAGCGCATTCAACAGGTAATCACCGGAGTAGCGACCGTTCATAGGTGCACCGCGGAGGTTGATTTCCTTGAAGAACAGAAACCGTTCTATCCAGCAACCATAAACGATCAAAAGTTGCATGAGCATTTTCTTGAAGTGGCCAAGAATGTTGTTGGAAACGAGAATGTTTATGAAACACAACCTGTAACAGTATCTGAAGACTTTGCATTCTATCAAGAGGTTATACCTGGTTTCTTCTTCATGCTTGGATTCAAAAGTCTCACTTCAGTTGAACCACTTCCAATGTTGCACTCACCACATTTCACCGTCAATGAACATGCTTTTCCCTATGGTGCTGCTCTTCATGCTTCCTTAGCTACTACTTTTCTTCTCAACCTTGATGATGGAGGCAAATGTCATGATGAAAGAAAGATTCATGAGTACCCAGAATTGTCCTATGAGGAATTTAAGACGAGTGAGGTCATAAGAGCAGAGTTGGACAAATTGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGTGTTATTGGATATATTGGAACTGGAGAACCTCCTTTTGTTGCTTTAAGAGCTGATATTGATGGTCTCCCTATTCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGCTTGTGGCCATGATGCTCACACAGCTATGGTTCTTGGTGCTGCTAAGATTCTCAAACAACATGAAGATCAGATAAAAGGCACCGTTGTTCTTGTTTTTCAACCAGCAGAGGAAGGAGGGGCAGGGGCAAAGAGAGTCTTAGAGTCAGGAGTATTAGACAAAGTGTCAGCCATCTTTGGATTGCACGTGGCGCCGGTACGTGAATTACCCGTAGGACACGTGGCATCTAAGGCTGGTCCATTATTGGCAGGAACTGCAATGTTTGATGCAACTATACATGGAAGGGGAGGCCATGCAGCTATGCCTCATTTCGCCATTGATCCCGTTTTGGCAGCTTCTAGTGCTGTTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCTGATCCTCTTGATCCCCAGGTTCTCACGGTTGCCAATTTCCATGCAGATGGTGCATACAACGTTATTCCAGATTCTGTCACTTTTGGAGGAACCATCCGAGCTTTATTACCTGAAAGCATCGCGCGTTTGAAGGAGCGCATTCACCAGGTGCACCGCGGAAGTCAACTTCCACGAACCGTCTATCCAGCAACCATAAACGACGACAAGTTGCATGAGCATTTTCTTGAAGTGGCCAAGAATGTTGTTGGAAACAATAATGTTCATGGGATGGAACCTGTAACAGTATCTGAAGACTTCTCATTCTATCAAGAGGCTTTACCTGGTTACTTCTTCATGCTTGGAATGCAGAGTCTCACTGGTGAACCACTACAATCGTTGCATTCACCACATTTCACTGTCAATGAAGATGCTTTACCCTATGGTGCTGCACTTCATGCTTCCTTAGCTACTACTTATCTTCTAAACCATGATGGAGCCAACAAGCTATTTGCTTTAAGTAATTTGAACTTGCATTTTCTCTTTTCACACACAAATCCGTTCCTTATGGGTTCCTTCAACTTGTTTTGTTTCTTCAACATCATCTTTCACGTCTTTGTTGCAACACCCATATTCTCAGATTCAAATAATAATGAACACTTATCATCGTCAATCTCCACAAAATTTCTAGATTTGGCAAAGAGTCCTGAAGTATTTGATTGGATGGTTGGGATCAGAAGGAAGATTCATGAGTACCCAGAATTGCAATATGAGGAATATAAGACGAGTGAGGTCATAAGAGAAGAGTTGGACAAATTGGGAATTCCATATAAGCATCCAGTTGCTGAAACGGGTGTTATTGGATACATTGGAACTGGAAACGCTCCTTTTGTTGCGTTAAGAGCTGATATTGATGGTCTCCCTATTCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTAGATGGAAAGATGCATGCTTGTGGCCATGATGCTCATACTGCTATGGTTCTTGGTGCTGCTAAGATTCTCAAACAACATGAAGATCAGATAAAAGGCACTGTTGTTCTTGTTTTTCAACCAGCGGAGGAAGGAGGGGCAGGGGCAAAGAGAGTCTTAGAGTCAGGAGTATTAGACAAAGTCTCAGCCATCTTTGGATTGCACGTGGCGCCGGTACATGAATTACCAGTAGGACACGTGGCATCTAAGGCTGGTCCATTAATGGCAGGAAGTGGAATGTTTGATGCAACTATACATGGAAAGGGAGGCCATGCAGCTATGCCTCAATTCGCCATTGATCCCGTTCTGGCAGCTTCTAGTATCGTTGTCAACTTGCAACAACTTGTTTCTCGTGAAGCCGATCCTCTTGATCCCCAGGTACTCACGGTTGCTAATTTCCATGGAGATGGTGCATTCAACGTTATTCCAGATTCTGTCACTATTGGAGGAACCTTCCGAGCTTTTTCAACCAAAAGCATCACGTGTTTGAAGAAGCGCATACACCAGGTTATCACCGGACAAGCGGCAGTTCATAGGTGCACCGCGGAGGTGGACTTCCATGAAGATAAGAAACCGTTGTATCCGGCAACCATAAACGACGACAAGTTGCACGAGCATTTTCTTGAAGTGGCCAAGAAAGTTGTTGGAAACAATAATGTTCATGGGATGGAACCTGTAACAGTATCTGAAGACTTCTCATTCTATCAAGAGGCTTTACCTGGTTACTTCTTCATGCTTGGAATGCAGAGTCTCACTGGTGAACCACTACAATCGTTGCATTCACCACATTTCACAGTCAACGAAGATGCTTTACCCTATGGTGCTGCACTTCATGCTTCCTTAGCTACTACTTATCTTTTAAACCATGATGGAGCCAACAAAGTGGGAGGGAAATATCATGATGAGTTATAG 3765 0.4321 MGFFNLFLFIIIFHVFVTTPIFSHSNNNNERSSSSISNFLDLAKSPEVFDWMVRIRRKIHEYPELLYEEFNTSEVIRTELDNLGISYKHPVAETGVIGYIGTGKAPFVALRADIDGLPIQEMVEWEHKSKVDEKMHACAHDAHTAMLLGAAKILKQHEHQIKGTVVLVFQPAEEGGAGAKKVLEAGVLDKVSAIFGLHLVPTLPLGHVASKPAMPHLSIDPLLAASSAVVNLQQLVSREADPLDPQVVTVANFHGDGAFNVIPDSVTIGGTFRAFSPESITRLKERIQQVITGVATVHRCTAEVDFLEEQKPFYPATINDQKLHEHFLEVAKNVVGNENVYETQPVTVSEDFAFYQEVIPGFFFMLGFKSLTSVEPLPMLHSPHFTVNEHAFPYGAALHASLATTFLLNLDDGGKCHDERKIHEYPELSYEEFKTSEVIRAELDKLGISYKHPVAETGVIGYIGTGEPPFVALRADIDGLPIQEMVEWEHKSKVPGKMHACGHDAHTAMVLGAAKILKQHEDQIKGTVVLVFQPAEEGGAGAKRVLESGVLDKVSAIFGLHVAPVRELPVGHVASKAGPLLAGTAMFDATIHGRGGHAAMPHFAIDPVLAASSAVVNLQQLVSREADPLDPQVLTVANFHADGAYNVIPDSVTFGGTIRALLPESIARLKERIHQVHRGSQLPRTVYPATINDDKLHEHFLEVAKNVVGNNNVHGMEPVTVSEDFSFYQEALPGYFFMLGMQSLTGEPLQSLHSPHFTVNEDALPYGAALHASLATTYLLNHDGANKLFALSNLNLHFLFSHTNPFLMGSFNLFCFFNIIFHVFVATPIFSDSNNNEHLSSSISTKFLDLAKSPEVFDWMVGIRRKIHEYPELQYEEYKTSEVIREELDKLGIPYKHPVAETGVIGYIGTGNAPFVALRADIDGLPIQEMVEWEHKSKVDGKMHACGHDAHTAMVLGAAKILKQHEDQIKGTVVLVFQPAEEGGAGAKRVLESGVLDKVSAIFGLHVAPVHELPVGHVASKAGPLMAGSGMFDATIHGKGGHAAMPQFAIDPVLAASSIVVNLQQLVSREADPLDPQVLTVANFHGDGAFNVIPDSVTIGGTFRAFSTKSITCLKKRIHQVITGQAAVHRCTAEVDFHEDKKPLYPATINDDKLHEHFLEVAKKVVGNNNVHGMEPVTVSEDFSFYQEALPGYFFMLGMQSLTGEPLQSLHSPHFTVNEDALPYGAALHASLATTYLLNHDGANKVGGKYHDEL* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0406 1254 TIGRFAM amidohydrolases: amidohydrolase 52 212 IPR017439 GO:0016787
Amo19g0406 1254 TIGRFAM amidohydrolases: amidohydrolase 420 766 IPR017439 GO:0016787
Amo19g0406 1254 TIGRFAM amidohydrolases: amidohydrolase 860 1224 IPR017439 GO:0016787
Amo19g0406 1254 Pfam Peptidase family M20/M25/M40 917 1233 IPR002933 GO:0016787
Amo19g0406 1254 Pfam Peptidase dimerisation domain 583 676 IPR011650 -
Amo19g0406 1254 Pfam Peptidase dimerisation domain 1028 1125 IPR011650 -
Amo19g0406 1254 SUPERFAMILY Bacterial exopeptidase dimerisation domain 583 679 IPR036264 -
Amo19g0406 1254 Pfam Peptidase family M20/M25/M40 109 403 IPR002933 GO:0016787
Amo19g0406 1254 Gene3D - 1027 1145 - -
Amo19g0406 1254 Gene3D - 582 687 - -
Amo19g0406 1254 Gene3D Zn peptidases 420 764 - -
Amo19g0406 1254 CDD M20_IAA_Hyd 52 407 IPR044757 GO:0009850|GO:0016787
Amo19g0406 1254 SUPERFAMILY Zn-dependent exopeptidases 47 408 - -
Amo19g0406 1254 SUPERFAMILY Bacterial exopeptidase dimerisation domain 213 307 IPR036264 -
Amo19g0406 1254 PANTHER PEPTIDASE M20 FAMILY MEMBER 419 783 IPR017439 GO:0016787
Amo19g0406 1254 SUPERFAMILY Bacterial exopeptidase dimerisation domain 1027 1146 IPR036264 -
Amo19g0406 1254 PANTHER PEPTIDASE M20 FAMILY MEMBER 814 1254 IPR017439 GO:0016787
Amo19g0406 1254 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 411 IPR017439 GO:0016787
Amo19g0406 1254 PANTHER AUXIN CONJUGATE HYDROLASE 1 411 - -
Amo19g0406 1254 Gene3D Zn peptidases 860 1222 - -
Amo19g0406 1254 SUPERFAMILY Zn-dependent exopeptidases 855 1239 - -
Amo19g0406 1254 CDD M20_IAA_Hyd 860 1237 IPR044757 GO:0009850|GO:0016787
Amo19g0406 1254 Gene3D Zn peptidases 52 400 - -
Amo19g0406 1254 PANTHER AUXIN CONJUGATE HYDROLASE 419 783 - -
Amo19g0406 1254 CDD M20_IAA_Hyd 420 779 IPR044757 GO:0009850|GO:0016787
Amo19g0406 1254 PANTHER AUXIN CONJUGATE HYDROLASE 814 1254 - -
Amo19g0406 1254 Pfam Peptidase family M20/M25/M40 472 775 IPR002933 GO:0016787
Amo19g0406 1254 Gene3D - 214 315 - -
Amo19g0406 1254 SUPERFAMILY Zn-dependent exopeptidases 420 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0406 Amo-Chr19 5313224 5344632 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0406 K21604 K14664 gmx:100794121 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0406 19 5313224 5344632 Amo19g0406 19 5313224 5344632 ECH
Amo19g0406 19 5313224 5344632 Amo09g0296 09 3403440 3406722 hybridization
Amo19g0403 19 5299792 5303138 Amo19g0406 19 5313224 5344632 PCT
Amo09g0295 09 3365688 3401097 Amo19g0406 19 5313224 5344632 PCT
Amo19g0406 19 5313224 5344632 Amo19g0403 19 5299792 5303138 PCT
Amo19g0406 19 5313224 5344632 Amo09g0295 09 3365688 3401097 PCT