Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0411 ATGGTTCCATTTCCGTTTCACTTTTGTGCTCTCTCTCTCCCTCACACACACATTCACTACAACTTAGTTGGAGTAGATACCATCATACCAATGGCTTCCTTCACTTTGTTCCATCTCTTCATTGCCATCATCCTCCATGTCTTTCTTGCCGCAACACCCATCTTCTCAGTTTCAGAACAACTCTCATCATCAACAATCCCCACCAGGTTTCTCGATTTTGCCAAAAAGCCTGAAACTTTCGATTGGATGGTGAACATCAGAAGGAAGATTCACGAGTACCCAGAATTGCTATATGAGGAATTTAAGACCAGTGAGCTCATAAGAATAGAGTTGGATAAATTGGGAATTTCATATAAGCATCCAGTTGCTGGAACTGGTGTTATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTCTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAATGGGAGCACAAGAGTAAAGTACCAGGGAAGATGCATGCTTGTGGTCATGATGCTCATGTTACTATGGTTCTTGGTGCTGCTAACATTCTCAAACAGCATGAAAAAGAGATACAAGGAACTGTTGTACTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGGGCTAAAAAGGTTATAGAAGCCGGAGCTTTAAAAGATGTAGGTGCTATCTTTGGATTGCATGTTGCCCCTAATATTCGTGTAGGCGAAGTAGGCTCAAGGTCTGGTACATTAATGGCAGCAAGTGGTTTCTTTGAAGCAACAATAAATGGAAAGGGGGGTCATGCAGCTATTCCTCAACATTCTATAGACCCTATSTTGGCAGCTTCTAATGTGATTGTTAGCTTACAACACCTTGTATCTCGTGAATCCGATCCTCTGGATTCCCAGGTTGTGACAGTTGCAAAATTCCAAGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCTTTCTCGAAAGAAAGTTTCTTGCAACTGAGACATCGCATTGAGCAGGTTATTGTAGCGCAGGCCGCAGTGCAGCGGTGCAACGCAACAGTGAACTTCCTAGAGGGAGAGAAACCTTTCTATCCTGCTACCATAAATGATGGGAAACTACACAAGCATTTTCAAACTGTGGCAGGGACTTTGCTGGGTYCAAYTAAAGTTATTGAGGTTCCACCAATGATGGGAGCTGAAGACTSTTCYTTCTATCAAGAGGTTATACCTGGCTACTTCTTTTGGCTTGGAATGCAGAATGCATCAAATGAAAGGCTTCACTCGTTACATTCACCTTTTTTCACAGTCAATGAAGATGCACTTCCTTATGGTGCTGCACTTCATGCATCACTAGCTGCTACTTACCTTCTAAAACATCAGAATGTTGTGCCATTTGTAGAAGCCATGTATAATGATGAATTATTTTTGTCCATAAAATCTCACTCCCACTCCCACTCAGTAGACACTAAGAGAGTGCCAATGGCTTCCTTCACTTTGTTCTTTCTCTCCATCACCATCATCCTCCATGTCTTTTTTGCCGCAACACCCTCCTCCTCAGTTTCAGAACAACTCTCATCATCAACAATCCCCACCAGGTTTCTCGATTTTGCCAAAAAGCCTGAAACTTTCGATTGGATGGTTGGGATCAGAAGGAAGATTCATGAGTACCCAGAATTGCTATATGAGGAATTTAAGACGAGTGAGGTCATAAGAGCAGAGTTGGACAAAATGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGTGTTATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTTTAAGAGGTGACATTGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGCCATGATGCTCACACTGCTATGCTTCTTGGTGCTGCTAAGATTCTCAAACAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGTGCTAAAAGGATCATAGAAGCTGGAGCTTTAGAAAATGTTTCTGCCATCTTTGGATTGCATGTGATGCCTAACTATCGTGTAGGTGAAGTRGCCTCAAGGTCRGGTGCAATAATGGCAGCAAGTGGCKGATTTCAAGCGACGATSAGCGGAAAGGGGGGTCATGCAGCTATTCCTCAACATTCTATAGACCCTATATTGGCTGCTGCTAATGTGATTGTTAGCTTACAGCACCTTGTATCTCGTGAATCCGATCCTCTTGATTCCCAGGTTGTGACGGTTGCGAAATTCCAAGGAGGCGATGCATTCAACGTTATCCCAGATTCTGTCACTATTGGGGGCACCTTCCGAACTTTCTCAAAAGAAAGTTTCAAGCAGCTGAAACAGCGCATTGAGCAGGTTATTGTAGGGCAAGCTGCAGTACAGAGGTGCAACGCAACAGTCGACTTCTTTCAGGAAAAGAAACCTTTCTATCCTGCTGTTATAAACGACGGCGGATTGCATAAACATTTCCAGAATGTTGCAGGGAGTTTGCTTGGAACCAATAAAGTTATGGAAATGCCACCAGTGATGGCAGCAGAAGACTTTGCATTCTATCAAGAGGTTATACCTGGCTACTTCTTTTTTCTTGGAATGCAGYATGATTCAAGTGAAAGGCTTCCATTAATACATTCACCATATTTCAGAGTCAATGAAGATGCACTTCCTTATGGTGCTTCCCTTCATGCATCATTGGCTGCTACTTACCTTCTAAAACATCACCATGATGTAACCATTGTAGAGGGCAAAAATCATGATGAATTATAG 2826 0.4292 MVPFPFHFCALSLPHTHIHYNLVGVDTIIPMASFTLFHLFIAIILHVFLAATPIFSVSEQLSSSTIPTRFLDFAKKPETFDWMVNIRRKIHEYPELLYEEFKTSELIRIELDKLGISYKHPVAGTGVIGYIGTRKPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMVLGAANILKQHEKEIQGTVVLVFQPAEEGGAGAKKVIEAGALKDVGAIFGLHVAPNIRVGEVGSRSGTLMAASGFFEATINGKGGHAAIPQHSIDPXLAASNVIVSLQHLVSRESDPLDSQVVTVAKFQGGDAFNVIPDSVTIGGTFRAFSKESFLQLRHRIEQVIVAQAAVQRCNATVNFLEGEKPFYPATINDGKLHKHFQTVAGTLLGXXKVIEVPPMMGAEDXSFYQEVIPGYFFWLGMQNASNERLHSLHSPFFTVNEDALPYGAALHASLAATYLLKHQNVVPFVEAMYNDELFLSIKSHSHSHSVDTKRVPMASFTLFFLSITIILHVFFAATPSSSVSEQLSSSTIPTRFLDFAKKPETFDWMVGIRRKIHEYPELLYEEFKTSEVIRAELDKMGISYKHPVAETGVIGYIGTRKPPFVALRGDIDALPMQEMVEWEHKSKVPGKMHACGHDAHTAMLLGAAKILKQHEKEIQGTVVLVFQPAEEGGAGAKRIIEAGALENVSAIFGLHVMPNYRVGEVASRSGAIMAASGXFQATXSGKGGHAAIPQHSIDPILAAANVIVSLQHLVSRESDPLDSQVVTVAKFQGGDAFNVIPDSVTIGGTFRTFSKESFKQLKQRIEQVIVGQAAVQRCNATVDFFQEKKPFYPAVINDGGLHKHFQNVAGSLLGTNKVMEMPPVMAAEDFAFYQEVIPGYFFFLGMQXDSSERLPLIHSPYFRVNEDALPYGASLHASLAATYLLKHHHDVTIVEGKNHDEL* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0411 941 CDD M20_IAA_Hyd 83 458 IPR044757 GO:0009850|GO:0016787
Amo19g0411 941 SUPERFAMILY Zn-dependent exopeptidases 78 460 - -
Amo19g0411 941 SUPERFAMILY Bacterial exopeptidase dimerisation domain 248 367 IPR036264 -
Amo19g0411 941 Pfam Peptidase family M20/M25/M40 605 919 IPR002933 GO:0016787
Amo19g0411 941 SUPERFAMILY Zn-dependent exopeptidases 543 925 - -
Amo19g0411 941 Pfam Peptidase family M20/M25/M40 140 454 IPR002933 GO:0016787
Amo19g0411 941 Pfam Peptidase dimerisation domain 253 346 IPR011650 -
Amo19g0411 941 Pfam Peptidase dimerisation domain 718 808 IPR011650 -
Amo19g0411 941 PANTHER AUXIN CONJUGATE HYDROLASE 37 476 - -
Amo19g0411 941 TIGRFAM amidohydrolases: amidohydrolase 548 910 IPR017439 GO:0016787
Amo19g0411 941 TIGRFAM amidohydrolases: amidohydrolase 83 445 IPR017439 GO:0016787
Amo19g0411 941 PANTHER AUXIN CONJUGATE HYDROLASE 502 941 - -
Amo19g0411 941 Gene3D - 248 366 - -
Amo19g0411 941 Gene3D - 713 831 - -
Amo19g0411 941 CDD M20_IAA_Hyd 548 923 IPR044757 GO:0009850|GO:0016787
Amo19g0411 941 SUPERFAMILY Bacterial exopeptidase dimerisation domain 713 832 IPR036264 -
Amo19g0411 941 Gene3D Zn peptidases 548 908 - -
Amo19g0411 941 Gene3D Zn peptidases 83 443 - -
Amo19g0411 941 PANTHER PEPTIDASE M20 FAMILY MEMBER 37 476 IPR017439 GO:0016787
Amo19g0411 941 PANTHER PEPTIDASE M20 FAMILY MEMBER 502 941 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0411 Amo-Chr19 5438798 5448403 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0411 K21604 K14664 gmx:100789077 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0411 19 5438798 5448403 Amo09g0293 09 3338853 3348095 hybridization
Amo19g0411 19 5438798 5448403 Amo09g0295 09 3365688 3401097 hybridization
Amo19g0411 19 5438798 5448403 Amo19g0411 19 5438798 5448403 PCT
Amo19g0411 19 5438798 5448403 Amo09g0295 09 3365688 3401097 PCT
Amo09g0293 09 3338853 3348095 Amo19g0411 19 5438798 5448403 PCT
Amo19g0411 19 5438798 5448403 Amo09g0293 09 3338853 3348095 PCT
Amo09g0295 09 3365688 3401097 Amo19g0411 19 5438798 5448403 PCT