Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0293 ATGGCTTCCTTCACTTTGTTCCATCTCTTCATTGCCATCATCCTCCATGTCTTTCTTGCCGCAACACCCATCTTCTCATCATTATCAACATCAACAATCCCCACCAGGTTTCTCGATTTTGCCAAAAAGCCTGAAACTTTCGATTGGATGGTGAACATCAGAAGGAAGATTCACCAGTACCCAGAATTGCTATATGAGGAATTTAAGACCAGTGACCTCATAAGAATAGAGTTGGACAAATTGGGAATTTCATACAAGCATCAAGTTGCTGGAACTGGAGTTATTGGATACATTGGAACTGGAAAACCTCCTTTTGTTGCTCTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAATGGGAGCACAAGAGTAAAGTACCAGGGAAGATGCATGCTTGTGGTCATGATGCTCATGTTACTATGGTTCTTGGTGCTGCTAACATTCTCAAACAGCATGAAAAAGAGATACAAGGAACTGTTGTACTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGGGCTAAAAAGGTTATAGAAGCCGGAGCTTTAAAAGATGTAGGTGCTATCTTTGGATTGCATGTTGCCCCTAATATTCGTGTAGGCGAAGTAGGCTCAAGGTCTGGTACATTAATGGCAGCAAGTGGTTTCTTTGAAGCAACAATAAATGGAAAGGGGGGTCATGCAGCTATTCCTCAACATTCTATAGACCCTATATTGGCAGCTTCTAATGTGATTGTTAGCTTACAACACCTTGTATCTCGTGAATCCGATCCTCTGGATTCCCAGGTTGTGACAGTTGCAAAATTCCAAGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCTTTCTCAAAAGAAAGTTTCTTGCAACTGAGACAGCGCATTGAGCAGGCCGCAGTGCAGCGGTGCAACGCAACAGTGAACTTCCTAGAGGGAGAGAAACCTTTCTATCCTGCTACCATAAATGATGGGAAACTACACAAGCATTTTCAAACTGTGGCAGGGACTTTGCTGGGTACAAATAAAGTTATTGAGGTTCCACCAATGATGGGAGCTGAAGACTSTTCATTCTATCAAGAGGTTATACCTGGCTACTTCTTTTGGCTTGGAATGCAGAATGCATCAAATGAAAGGCTTCACTCATTACATTCACCTTTTTTCACAGTCAATGAAGATGCACTTCCTTATGGTGCTGCACTTCATGCATCACTAGCTGCTACTTACCTTCTAAAACATCAGAATGTTGTGCCATTTGTAGAAGCCATGTATAATGATGAATTAGTGCCAATGGCTTCCTTCACTTTGTTCTTTCTCTCCATCACCATCATCCTCCATGTCTTTGTTGCCGCAACACCCTCCTCCTCCTCAGCTTCAGAACAACTCTCATCATCAACACTCCCCACCAGGTTTCTCGATTTTGCCAAAAAGCCTGAAACTTTCGATTGGATGGTGAATATCAGAAGGAAGATTCATGAGTACCCAGAATTGCAATATGAGGAATTTAAGACGAGTGAGGTCATAACAGAAGAGTTGGACAAATTGGGAATTTCATATAAGCATCCAGTTGCTGAAACCGGTGTTATTGGATACATTGGAACTCGAAAACCTCCTTTTGTTGCTTTAAGAGCTGATATTGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTGCCTGGAAAGATGCATGCTTGTGGCCATGATGCTCACACTGCTATGGTTCTTGGTGCTGCAAAGATTCTCAAACAGCATGAAAAAGAGATACAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGTGCTAAAAGGATCATAGAAGCTGGAGCTTTAGAAAATGTTTCTGCCATCTTTGGATTGCATGTGATGCCTAACTATCGTGTAGGTGAAGTRGCCTCAAGGTCRGGTGCAATAATGGCAGCAAGTGGCKGATTTCAAGCGACGATAAGCGGAAAGGGGGGTCATGCAGCTATTCCTCAACATTCTATAGACCCTATATTGGCTGCTGCTAATGTGATTGTTAGCTTACAGCACCTTGTATCTCGTGAATCCGATCCTCTTGATTCCCAGGTTGTGACGGTTGCGAAATTCCAAGGAGGCGATGCATTCAACGTTATCCCAGATTCTGTCACTATTGGGGGCACCTTCCGAACTTTCTCAAAAGAAAGTTTCAAGCAGCTGAAACAGCGCATTGAGCAGGTTATTGTAGGGCAAGCTGCAGTACAGAGGTGCAACGCAACAGTCGACTTCTTTCAGGAAAAGAAACCTTTCTATCCTGCTGTTATAAACGACGGCGGATTGCATAAACATTTCCAAAATGTTGCAGGGAGTTTGCTTGGAACCAATAAAGTTATGGAAATGCCACCAGTGATGGCAGCAGAAGACTTTGCATTCTATCAAGAGGTTATACCTGGCTACTTCTTTTTTCTTGGAATGCAGAATGATTCAAGTGAAAGGCTTCCATTAATACATTCACCATATTTCACAGTCAATGAAGATGCACTTCCTTATGGTGCTTCCCTTCATGCATCATTGGCTGCTACTTACCTTCTAAAACATCACCATGATGTAACCATTGTAGAGGGCAAAAATCATGATGAATTATAG 2664 0.4291 MASFTLFHLFIAIILHVFLAATPIFSSLSTSTIPTRFLDFAKKPETFDWMVNIRRKIHQYPELLYEEFKTSDLIRIELDKLGISYKHQVAGTGVIGYIGTGKPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVTMVLGAANILKQHEKEIQGTVVLVFQPAEEGGAGAKKVIEAGALKDVGAIFGLHVAPNIRVGEVGSRSGTLMAASGFFEATINGKGGHAAIPQHSIDPILAASNVIVSLQHLVSRESDPLDSQVVTVAKFQGGDAFNVIPDSVTIGGTFRAFSKESFLQLRQRIEQAAVQRCNATVNFLEGEKPFYPATINDGKLHKHFQTVAGTLLGTNKVIEVPPMMGAEDXSFYQEVIPGYFFWLGMQNASNERLHSLHSPFFTVNEDALPYGAALHASLAATYLLKHQNVVPFVEAMYNDELVPMASFTLFFLSITIILHVFVAATPSSSSASEQLSSSTLPTRFLDFAKKPETFDWMVNIRRKIHEYPELQYEEFKTSEVITEELDKLGISYKHPVAETGVIGYIGTRKPPFVALRADIDALPMQEMVEWEHKSKVPGKMHACGHDAHTAMVLGAAKILKQHEKEIQGTVVLVFQPAEEGGAGAKRIIEAGALENVSAIFGLHVMPNYRVGEVASRSGAIMAASGXFQATISGKGGHAAIPQHSIDPILAAANVIVSLQHLVSRESDPLDSQVVTVAKFQGGDAFNVIPDSVTIGGTFRTFSKESFKQLKQRIEQVIVGQAAVQRCNATVDFFQEKKPFYPAVINDGGLHKHFQNVAGSLLGTNKVMEMPPVMAAEDFAFYQEVIPGYFFFLGMQNDSSERLPLIHSPYFTVNEDALPYGASLHASLAATYLLKHHHDVTIVEGKNHDEL* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0293 887 SUPERFAMILY Zn-dependent exopeptidases 489 871 - -
Amo09g0293 887 TIGRFAM amidohydrolases: amidohydrolase 50 407 IPR017439 GO:0016787
Amo09g0293 887 TIGRFAM amidohydrolases: amidohydrolase 494 856 IPR017439 GO:0016787
Amo09g0293 887 CDD M20_IAA_Hyd 494 869 IPR044757 GO:0009850|GO:0016787
Amo09g0293 887 Pfam Peptidase dimerisation domain 220 313 IPR011650 -
Amo09g0293 887 Pfam Peptidase dimerisation domain 664 754 IPR011650 -
Amo09g0293 887 PANTHER AUXIN CONJUGATE HYDROLASE 447 887 - -
Amo09g0293 887 SUPERFAMILY Zn-dependent exopeptidases 45 422 - -
Amo09g0293 887 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 329 IPR036264 -
Amo09g0293 887 CDD M20_IAA_Hyd 50 420 IPR044757 GO:0009850|GO:0016787
Amo09g0293 887 PANTHER PEPTIDASE M20 FAMILY MEMBER 447 887 IPR017439 GO:0016787
Amo09g0293 887 Gene3D Zn peptidases 50 405 - -
Amo09g0293 887 Gene3D Zn peptidases 494 854 - -
Amo09g0293 887 Pfam Peptidase family M20/M25/M40 551 865 IPR002933 GO:0016787
Amo09g0293 887 SUPERFAMILY Bacterial exopeptidase dimerisation domain 659 778 IPR036264 -
Amo09g0293 887 PANTHER PEPTIDASE M20 FAMILY MEMBER 7 438 IPR017439 GO:0016787
Amo09g0293 887 Pfam Peptidase family M20/M25/M40 107 416 IPR002933 GO:0016787
Amo09g0293 887 PANTHER AUXIN CONJUGATE HYDROLASE 7 438 - -
Amo09g0293 887 Gene3D - 659 777 - -
Amo09g0293 887 Gene3D - 215 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0293 Amo-Chr9 3338853 3348095 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0293 K21604 K14664 gmx:100789077 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0411 19 5438798 5448403 Amo09g0293 09 3338853 3348095 hybridization
Amo09g0293 09 3338853 3348095 Amo19g0411 19 5438798 5448403 PCT
Amo09g0293 09 3338853 3348095 Amo09g0295 09 3365688 3401097 PCT
Amo19g0411 19 5438798 5448403 Amo09g0293 09 3338853 3348095 PCT
Amo09g0295 09 3365688 3401097 Amo09g0293 09 3338853 3348095 PCT