Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0403 ATGTGTTCCTCTTTCAAGTACTTCTACTTCCACTTACTCCCTATTTTCTATTTCCTTATTATTATTGCTGCCACAACAACCGAATTCAAGTTTCTTGATTCAGCTAAGAGTCCTGAGGTTTTTGATTGGATGGTGAACATCAGAAGAAAGATTCATGAGAATCCGGAATTGGGGTATCAGGAATTTGAGACCAGTGAGGTCATAAGAGCAGAGTTGGACAAATTGGGAATTTCATATAAGCATCCAATTGCTGAAACCGGTGTCATTGGATACATTGGAACTGGAAAACCTCCTTTTGTTGCTCTAAGAGCTGACATGGATGCTCTTGCTTTACAGGAAATGGTGGATTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCACGCATGCGGTCATGATGCTCATGTTGCTATGCTTCTCGGTGCTGCAATGATCCTCAAACAAAATGAAAATGAGATAAAAGGAACTGTTATTCTTGTTTTCCAACCGGCTGAGGAAGGGGGTGCAGGGGCTAAGAAAATTGTAGAATCCGGAGTCTTAGAAAATGTTAATGCTATCTTTGGATTGCATATCACAGGAAAGTTTCTAATAGGCGAAGTAGGTTCTCGATCTGGTCTCATGTATGCAAATTCTGGTTTCTTTGAAGCAACGATAAGTGGAAAGGGAGGTCATGCAGCTATTCCTCAACATTCTATAGACCCCATATTGGCAGCTTCTAATGTAATTGTTAGCTTACAGCACCTTATTTCTCGAGAAGCCGATCCTCTTGACTCCCAGGTTGTGACAGTAGGAAAAGTCGAAGGAGGCAGTGCGTTCAATATTATTCCCGATACTGTCACGATTGGTGGCACCTTCCGGGCATTTTCAAAAGAAGGCTTCAAGCAACTGCAGCAGCGTATTGAGCAGGTTATTATTGGCCAAGCCGCCGTCCATAGGTGTAACGCAACAGTGGACTTCCTTCAAGAAGAGAAACCTTTCTACCCTGCAACCATAAACAATGGTGACTTGCACAAACATTTTCTTGACATTGCCACAAAATCTCTTGGCATCCAAAAATTTAATGAGATGCGACCATCAATGGGAGCCGAAGACTTCTCGTTCTATCAAGAGGTTATACCTGGATACTACTTCGTGCTTGGAATGCAGAACGCGTCGCATGAACGGCTTGCCGGCGGACACTCACCTTATTATAAAGTCAATGAAGATGCACTTCCTTTAGGAGCTGCACTTCATGCATCCTTGGCTTCTACTTACCTTCTAAAACTTCAGCAGGATATACCTCTTGTAGAGGGTCAATATCATGATGAGTTGTAA 1314 0.4269 MCSSFKYFYFHLLPIFYFLIIIAATTTEFKFLDSAKSPEVFDWMVNIRRKIHENPELGYQEFETSEVIRAELDKLGISYKHPIAETGVIGYIGTGKPPFVALRADMDALALQEMVDWEHKSKVPGKMHACGHDAHVAMLLGAAMILKQNENEIKGTVILVFQPAEEGGAGAKKIVESGVLENVNAIFGLHITGKFLIGEVGSRSGLMYANSGFFEATISGKGGHAAIPQHSIDPILAASNVIVSLQHLISREADPLDSQVVTVGKVEGGSAFNIIPDTVTIGGTFRAFSKEGFKQLQQRIEQVIIGQAAVHRCNATVDFLQEEKPFYPATINNGDLHKHFLDIATKSLGIQKFNEMRPSMGAEDFSFYQEVIPGYYFVLGMQNASHERLAGGHSPYYKVNEDALPLGAALHASLASTYLLKLQQDIPLVEGQYHDEL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0403 437 Gene3D Zn peptidases 44 404 - -
Amo19g0403 437 Pfam Peptidase dimerisation domain 213 304 IPR011650 -
Amo19g0403 437 Pfam Peptidase family M20/M25/M40 101 415 IPR002933 GO:0016787
Amo19g0403 437 SUPERFAMILY Zn-dependent exopeptidases 39 419 - -
Amo19g0403 437 Gene3D - 209 327 - -
Amo19g0403 437 SUPERFAMILY Bacterial exopeptidase dimerisation domain 213 319 IPR036264 -
Amo19g0403 437 PANTHER AUXIN CONJUGATE HYDROLASE 17 437 - -
Amo19g0403 437 PIRSF Amidohydrol_AmhX 30 423 IPR017439 GO:0016787
Amo19g0403 437 CDD M20_IAA_Hyd 44 419 IPR044757 GO:0009850|GO:0016787
Amo19g0403 437 PANTHER PEPTIDASE M20 FAMILY MEMBER 17 437 IPR017439 GO:0016787
Amo19g0403 437 TIGRFAM amidohydrolases: amidohydrolase 44 407 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0403 Amo-Chr19 5299792 5303138 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0403 K21604 - gmx:100794121 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0403 19 5299792 5303138 Amo09g0295 09 3365688 3401097 hybridization
Amo19g0403 19 5299792 5303138 Amo19g0406 19 5313224 5344632 PCT
Amo19g0403 19 5299792 5303138 Amo09g0296 09 3403440 3406722 PCT
Amo19g0406 19 5313224 5344632 Amo19g0403 19 5299792 5303138 PCT
Amo09g0296 09 3403440 3406722 Amo19g0403 19 5299792 5303138 PCT