Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0093 . . . . . Adu04g01074 . . . . . . . . . . . . . . . Arst4g01499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa1g01667 . . . . . . . . . . . . . Mepo6g01537 . Mesa5g03060 . . . . . Phac9g04037 . Phco7g02887 . . . . . Pste2g03249 . . . . . Pumo2g01456 . Pvu9g2520 . . . Seca6g03934 . Spst9g03020 . . Sto13g0096 . . . . Trre3g02018 . . . . . Vifa1g09189 . Vimu10g00259 . . . Vivi4g02599 . .
Vvi1g0094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto13g0097 . . . . . . . . . . . . . . . . . . .
Vvi1g0096 . . . . . Adu04g01076 . . . . . . . . . . . . . . . Arst4g01504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa1g01669 . . . . . . . . . . . . . Mepo6g01545 . . . . . . . Phac9g04034 . . . . . . . Pste2g03253 . . . . . Pumo2g01459 . Pvu9g2517 . Rops11g01616 . Seca6g03928 . Spst9g03017 . . Sto13g0099 . . . . Trre3g02027 . . . Vian4g00181 . Vifa1g09186 . Vimu10g00261 . Viun9g00231 . Vivi4g02596 . .
Vvi1g0097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0099 . . . . . Adu04g01077 . . . . . . . . . . . . . . . Arst4g01506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa1g01673 . . . . . . . . . . . . . Mepo6g01553 . Mesa5g03050 . . . . . . . Phco7g02882 . . . . . Pste2g03255 . . . . . Pumo2g01462 . Pvu9g2515 . Rops11g01618 . Seca6g03926 . Spst9g03015 . . . . . . . Trre3g02034 . . . Vian4g00184 . Vifa1g09179 . Vimu10g00263 . Viun9g00234 . Vivi4g02584 . .
Vvi1g0100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 10 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0091 Chr1 910536 918250 +
Vvi Vvi1g0092 Chr1 919324 920549 +
Vvi Vvi1g0093 Chr1 924765 929421 +
Adu Adu04g01074 Chr04 20097283 20102382 +
Arst Arst4g01499 Chr4 20209772 20215687 +
Lasa Lasa1g01667 Chr1 150446892 150450510 +
Mepo Mepo6g01537 Chr6 16906200 16911738 +
Mesa Mesa5g03060 Chr5 55451937 55456992 -
Phac Phac9g04037 Chr9 38615724 38622102 -
Phco Phco7g02887 Chr7 47848493 47853637 -
Pste Pste2g03249 Chr2 32403387 32409780 +
Pumo Pumo2g01456 Chr2 21690268 21691903 +
Pvu Pvu9g2520 Chr9 35690906 35697150 -
Seca Seca6g03934 Chr6 107015473 107021919 -
Spst Spst9g03020 Chr9 64232496 64235749 -
Sto Sto13g0096 Chr13 799023 806046 +
Trre Trre3g02018 Chr3 17752375 17757222 +
Vifa Vifa1g09189 Chr1 1452691037 1452694825 -
Vimu Vimu10g00259 Chr10 1602119 1602526 +
Vivi Vivi4g02599 Chr4 125426975 125431156 -
Vvi Vvi1g0094 Chr1 930504 944969 -
Vvi Vvi1g0095 Chr1 946331 947095 +
Sto Sto13g0097 Chr13 807060 813636 +
Vvi Vvi1g0096 Chr1 949722 957621 +
Adu Adu04g01076 Chr04 20141399 20146944 +
Arst Arst4g01504 Chr4 20254090 20259673 +
Lasa Lasa1g01669 Chr1 150517443 150520721 -
Mepo Mepo6g01545 Chr6 16978750 16984384 +
Phac Phac9g04034 Chr9 38598149 38607653 -
Pste Pste2g03253 Chr2 32434193 32448347 +
Pumo Pumo2g01459 Chr2 21787915 21795620 +
Pvu Pvu9g2517 Chr9 35673615 35682458 -
Rops Rops11g01616 Chr11 24680889 24690276 +
Seca Seca6g03928 Chr6 106963257 106970710 -
Spst Spst9g03017 Chr9 64219967 64221041 -
Sto Sto13g0099 Chr13 824702 833668 +
Trre Trre3g02027 Chr3 17941696 17946220 +
Vian Vian4g00181 Chr4 1668146 1675394 +
Vifa Vifa1g09186 Chr1 1452627701 1452632410 +
Vimu Vimu10g00261 Chr10 1611858 1619492 +
Viun Viun9g00231 Chr9 1468873 1475470 +
Vivi Vivi4g02596 Chr4 125377035 125380709 +
Vvi Vvi1g0097 Chr1 958580 959487 +
Vvi Vvi1g0098 Chr1 961115 963805 -
Vvi Vvi1g0099 Chr1 965906 971085 +
Adu Adu04g01077 Chr04 20157239 20160847 +
Arst Arst4g01506 Chr4 20270005 20273372 +
Lasa Lasa1g01673 Chr1 150943865 150946882 +
Mepo Mepo6g01553 Chr6 17085769 17088017 +
Mesa Mesa5g03050 Chr5 55345820 55349833 -
Phco Phco7g02882 Chr7 47821368 47824668 -
Pste Pste2g03255 Chr2 32448999 32459848 +
Pumo Pumo2g01462 Chr2 21850976 21873794 +
Pvu Pvu9g2515 Chr9 35666029 35669223 -
Rops Rops11g01618 Chr11 24719256 24724563 +
Seca Seca6g03926 Chr6 106939262 106943918 -
Spst Spst9g03015 Chr9 64211184 64214328 -
Trre Trre3g02034 Chr3 17994688 17996611 +
Vian Vian4g00184 Chr4 1686172 1688864 +
Vifa Vifa1g09179 Chr1 1451829082 1451831577 -
Vimu Vimu10g00263 Chr10 1625013 1628809 +
Viun Viun9g00234 Chr9 1484269 1487849 +
Vivi Vivi4g02584 Chr4 124991888 124994818 -
Vvi Vvi1g0100 Chr1 972356 975005 -