Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0280 ATGGCGTTGCCATTTTCCTCTCTCTTCTCTCTTCTTCTTCTTCTTATCTTCTTCTTCACGGATATCTGCAACGCACTACCCATTGCCCAAAATGGCACCGTTGAATACTTGAAGCTCCGATTGCTCCACATTAAGCCTTTCACTACCCCTTCCCAAGCTCTCTCATTTGATTCCCACCGCCTCTCCTTTTTCTTCTCCGCATTGCACACCCCTCAATCGCTCAAATCTCCAGTAGTCTCCGGCGCCTCCACCGGCTCTGGCCAGTACTTCGTTGATCTTAGGCTCGGAACCCCACCTCAGAAACTCCTCCTCGTGGCCGACACCGGCAGCGATTTAGTGTGGGTCAAGTGCTCCGCTTGCCGAAACTGCACCAGACACACACCGGGATCAGCCTTCTTGGCTCGCCACTCCACCACATTCTCCCCCAACCACTGTTACGACTCGGCGTGTCAACTCGTTCCCCTCCCAAAACACCATCGCTGCAACCACGCCCGCCTCCACAGTCCCTGTCGCTACGAGTACTCCTACGGCGACGGATCCAAAACTAGTGGGTTTTTCTCCAAAGAAACGACGACGTTGAACACCAGCTCCGGCAGGGAAGCCAAGCTGAAAGGGATAGCTTTCGGGTGTGCGTTTCGGATCTCTGGTCCCAGTGTTTCGGGTGCGAGCTTCAACGGTGCGCACGGAGTCATGGGCCTGGGCAGAGGACCCATCTCCCTATCTTCTCAACTGGGTCACCGATTTGGTAACAAGTTCTCATATTGTCTCATGGATCACGACATTTCACCATCTCCAACGAGCTATCTTCTAATCGGCAGCACCCAAAACGACGTCGCCCCCGGAAAACGCAGAATGCGCTTCACACCACTCCATATCAACCCTCTCTCCCCCACATTTTACTATATAGGGATCGAAAGCGTCTCCGTCGACGGCATCAAATTACCGATCAACCCCTCCGTCTGGGCCCTCGACGAACTGGGTAACGGCGGCACCATTGTCGACTCCGGCACCACCCTCACCTTCCTCCCCGAACCAGCCTACCTCCAGATCCTAACGGTTATAAAACGGCGCGTGAGGTTACCGAGTCCAGCTGAGCCGACTCCGGGTTTCGATCTGTGCGTGAACGTGTCAGAAATCGAACACCCGCGTCTACCCAAACTGAGTTTCAAACTCGGAGGTGACTCGGTGTTCTCGCCACCTCCAAGAAACTACTTCGTGGATACGGACGAGGACGTGAAGTGCTTGGCGTTACAGGCCGTTATGACCCCGTCAGGGTTCTCGGTGATTGGGAATCTAATGCAACAAGGATTTTTGTTGGAGTTCGACAAGGACAGGACGAGGCTCGGTTTTTCACGGCATGGCTGCGCCCTACCTTGA 1377 0.5447 MALPFSSLFSLLLLLIFFFTDICNALPIAQNGTVEYLKLRLLHIKPFTTPSQALSFDSHRLSFFFSALHTPQSLKSPVVSGASTGSGQYFVDLRLGTPPQKLLLVADTGSDLVWVKCSACRNCTRHTPGSAFLARHSTTFSPNHCYDSACQLVPLPKHHRCNHARLHSPCRYEYSYGDGSKTSGFFSKETTTLNTSSGREAKLKGIAFGCAFRISGPSVSGASFNGAHGVMGLGRGPISLSSQLGHRFGNKFSYCLMDHDISPSPTSYLLIGSTQNDVAPGKRRMRFTPLHINPLSPTFYYIGIESVSVDGIKLPINPSVWALDELGNGGTIVDSGTTLTFLPEPAYLQILTVIKRRVRLPSPAEPTPGFDLCVNVSEIEHPRLPKLSFKLGGDSVFSPPPRNYFVDTDEDVKCLALQAVMTPSGFSVIGNLMQQGFLLEFDKDRTRLGFSRHGCALP* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0280 458 Gene3D Acid Proteases 66 272 IPR021109 -
Vvi1g0280 458 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Vvi1g0280 458 PRINTS Pepsin (A1) aspartic protease family signature 427 442 IPR001461 GO:0004190|GO:0006508
Vvi1g0280 458 PRINTS Pepsin (A1) aspartic protease family signature 331 342 IPR001461 GO:0004190|GO:0006508
Vvi1g0280 458 FunFam Aspartyl protease family protein 2 67 272 - -
Vvi1g0280 458 Pfam Xylanase inhibitor C-terminal 300 451 IPR032799 -
Vvi1g0280 458 Pfam Xylanase inhibitor N-terminal 89 273 IPR032861 -
Vvi1g0280 458 SUPERFAMILY Acid proteases 82 455 IPR021109 -
Vvi1g0280 458 CDD pepsin_A_like_plant 88 455 IPR034161 -
Vvi1g0280 458 PANTHER OS07G0603500 PROTEIN-RELATED 47 455 - -
Vvi1g0280 458 FunFam Aspartyl protease family protein 281 457 - -
Vvi1g0280 458 ProSiteProfiles Peptidase family A1 domain profile. 89 451 IPR033121 -
Vvi1g0280 458 Gene3D Acid Proteases 273 456 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0280 Vvi-Chr1 2597606 2598982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0280 79 455 Miscellaneous Gene Families AT1G77480 25.000 4.41e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0280 K22683 - vvi:100256020 924.465