Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0100 ATGGCTGAATCCTTTGCATTTAACATTGCTGATAAGCTTCTGGGGAAGGCCACCTCCCTTGTTGTCGAGCAAGTCTGCCTTGCAGGGGGTGTCTACAGCGAGCTGGAAAATATCAAGGCCACCTTATCCACTGTCAGAGCCGTGCTCTTGGATGCGGAGGAGCAGCAAGTCAACAACCATCAGCTCACTGATTGGCTCGGGAAGCTCAAGGATTGCTTTTATGATGCAGAAGATGTGCTTGATGAATTTGAGTATGACTCTTTGCAGCGGGTAGTAGTGAGTGAGGGATGCATTAAAAGAAAGGTACGCCATTTCTTTTCCAGCTTTAAGATGGGTAATAAGATGAAGGAGATTAGAGAGAGATTAGATAAGGTCGCAGCTGATGCGGATAAATTTAATCTCAAGAAAATGGGTGTCAATGTGCCTGTGCCTGTCCTGAATAGGAAGAGGGAGAACTACTCCTTTGTGCGTGCTTCCGATGTCATCGGAAGGGATGATGATAAAGAAAATATTATACAGCTTCTGATGCAATCAAGCGATGAGGAAAATGTTTCTGTTCTTCCCTTGGTTGGAATCGGTGGTCTTGGCAAGACTACTCTGGCCAAATTAGTATATAATGATGGGAGAGTAGTAGCTCATTTTCAGAAAATAATGTGGGTTTGTGTGTCAGATGAGTTTGATGTTAAAAGGTTAATAAAAGAAATCATTACTTCTGCCACTCATGGCAAATGTGATGATTTACCCATGGATGAGTTGGCACGTCTTCTTAGAAATGAATTAGATGATAAAAAATTCTTACTTATCTTAGATGACGTGTGGAGTAAGAATCGAGATAAATGGCTTGAGTTAAAAGCCTTGCTAGATGGTGGTGCTAAGGGAAGTAAAATAATTGTCACCACACGTGATAAATTGGTAGCCTTCGTCATGGGTACTTGTCCCATGTATGAATTAAAGGGTCTTTCTGATGAGGAGTGTTTGTCTCTATTTATTACATGTGCATTCAAGGATGGTCGAGATAAACAATATCCAAGACTTGTGGGGATTGGGAAGGATATTGTCAAAAAATGCAAAGGCCTCCCTCTGGCGGTAAGAACTTTGGGTGGCTTGCTTTATTTAAAGGCAGAGGAAAAAGATTGGTTGAGAGTGCGAGATAGCGAAATTTGGAAACTAGAGCAAAAGAAAGATGATGTTTTGCCCGCATTGAAACTAAGCTACGATGAATTGCCATTTGATTTAAAGCAATGTTTTGCATTTTGTTCCCTTTATCCAAAAGATTTTGAATTCCTTAACATTACTTTGATTGAAATGTGGATGGGGCAAGGCTTGATTCGACCATCAGAACAAAACGAAGAGATGGAAGATATTGGCCATCGATACATTGATGAATTATTACAAAAATCATTCTTTCAAGATGTCGAGGAAGATATTCCGGGATTCTTTTATAGTTTCAAAATGCATGATCTTGTACATGATCTTGCGTTATTGGTGGCACAACCTGAGTGTAGCATGTTAAATTTTGATAGTGAAAACATTTCTACAAAAGTTCGACATAGACTCCCGAATTCTATTTGCAAATTGCACCATTTGCAAACATTGAATCTACTTGGATGGATGCGAAGCTTTACTGCTCTTAGAACATTGATAATTGCGGAATGTCCACGTCTATCGTCTTTGCCGAAACACCTACCTGCATTAGAGAACTTGATAATAGGAGATTGTGAAAGTCTTGATTTGGGGAATAGGAATGGGGAAAAGGAAGGCAACATTCAAGGATTTGGAAGCCTACGAAATTTGTACATTTCTGAGTTACCAAAGCTGGAGATTTTGCCCAGGTGGCTATTTCAAGTACCTACTTCTAACAATCTGCTTTACTTGTCGATTGACAATTGTGAAAACTTTAGAGCATTGTCAGAGTCACTAAGTCTCACATCCCTTGACACACTTGTGATTAAAGACTGCTCAGAACTCTTAGCTCTACCTGAGGGAATGGGTCACCTCACTGCATTAAGACAACTGCAGATTGAACGTTGCGATAACTTAGCAGCTTTGCCAGAGAAGATGCGTCGCCTTACTGCCCTAACACAGTTGAAGATTGAAGGCTGTCCTAAATTGGCTGAAAGATGCAAACCAAGAACAGGTGAAGACTGGAACAAGATTGCTCATGTAAAAGATATATATCTTAATGGCCAAAAGATTCAGGTAACATAA 2208 0.4026 MAESFAFNIADKLLGKATSLVVEQVCLAGGVYSELENIKATLSTVRAVLLDAEEQQVNNHQLTDWLGKLKDCFYDAEDVLDEFEYDSLQRVVVSEGCIKRKVRHFFSSFKMGNKMKEIRERLDKVAADADKFNLKKMGVNVPVPVLNRKRENYSFVRASDVIGRDDDKENIIQLLMQSSDEENVSVLPLVGIGGLGKTTLAKLVYNDGRVVAHFQKIMWVCVSDEFDVKRLIKEIITSATHGKCDDLPMDELARLLRNELDDKKFLLILDDVWSKNRDKWLELKALLDGGAKGSKIIVTTRDKLVAFVMGTCPMYELKGLSDEECLSLFITCAFKDGRDKQYPRLVGIGKDIVKKCKGLPLAVRTLGGLLYLKAEEKDWLRVRDSEIWKLEQKKDDVLPALKLSYDELPFDLKQCFAFCSLYPKDFEFLNITLIEMWMGQGLIRPSEQNEEMEDIGHRYIDELLQKSFFQDVEEDIPGFFYSFKMHDLVHDLALLVAQPECSMLNFDSENISTKVRHRLPNSICKLHHLQTLNLLGWMRSFTALRTLIIAECPRLSSLPKHLPALENLIIGDCESLDLGNRNGEKEGNIQGFGSLRNLYISELPKLEILPRWLFQVPTSNNLLYLSIDNCENFRALSESLSLTSLDTLVIKDCSELLALPEGMGHLTALRQLQIERCDNLAALPEKMRRLTALTQLKIEGCPKLAERCKPRTGEDWNKIAHVKDIYLNGQKIQVT* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0100 735 FunFam Probable disease resistance protein At1g61300 146 312 - -
Vvi1g0100 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 419 IPR027417 -
Vvi1g0100 735 PRINTS Disease resistance protein signature 640 656 - -
Vvi1g0100 735 PRINTS Disease resistance protein signature 356 370 - -
Vvi1g0100 735 PRINTS Disease resistance protein signature 259 273 - -
Vvi1g0100 735 PRINTS Disease resistance protein signature 186 201 - -
Vvi1g0100 735 Gene3D - 145 312 IPR027417 -
Vvi1g0100 735 CDD RX-CC_like 13 126 IPR038005 -
Vvi1g0100 735 Gene3D - 319 409 IPR042197 -
Vvi1g0100 735 Pfam NB-ARC domain 165 406 IPR002182 GO:0043531
Vvi1g0100 735 Coils Coil 115 135 - -
Vvi1g0100 735 Pfam Rx N-terminal domain 12 91 IPR041118 -
Vvi1g0100 735 Coils Coil 35 55 - -
Vvi1g0100 735 Gene3D - 11 124 - -
Vvi1g0100 735 FunFam Probable disease resistance protein At1g63360 405 495 - -
Vvi1g0100 735 SUPERFAMILY L domain-like 469 720 - -
Vvi1g0100 735 Gene3D Ribonuclease Inhibitor 578 712 IPR032675 -
Vvi1g0100 735 Gene3D Ribonuclease Inhibitor 499 577 IPR032675 -
Vvi1g0100 735 PANTHER DISEASE RESISTANCE PROTEIN RP 35 704 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0100 Vvi-Chr1 972356 975005 Dispersed/Transposed