Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0098 | ATGTCCTCCTGTAACTGTCACCAGCTCCTCTCTCCTCTACCTTTGGCTCTTCCTTCTTCACACTCTCCTCCTTCCCTCCAAACTCAACCGCCACCTTCAATTCAGAAACCCACCGCTTCTCCACTCACCTCCAAAACCCCTCCAAAACCCACATCCCCATCGCGCTCCACCGCCTCATGGGTCGACGCCCTTCGCTCCAGAACGCGATCAAATGATTTCCGTGAAGCCATTTCCACTTACATCGAAATGACGGTGTCGGGTGCTCGACCCGACAACTTCGCTTTCCCGGCAGTTTTGAAGGCGGTGTCGGGCCTCCAGGACTTGAAAACCGGGGAACAGATTCATGCGGCTGCTGTGAAATTTGGGTATGGATCGTCTTCGGTGACTGTGGCGAATACACTTGTTAATATGTATGGGAAGTGCGGTGGGATTGGGGATGTGTGCAAGGTGTTTGACAGAATTACTGACAGAGATCAAGTGTCATGGAACTCTTTTATTGCCGCATTGTGTCGATTTGAGAAGTGGGAGCAGGCGTTGGAGGCGTTTCGGGCGATGCAAATGGAGAATATGGAGCTCAGCTCGTTTACTCTGGTGAGTGTGGCGCTTGCGTGTTCAAATTTGGGTGTAATGCATGGTTTGCGACTTGGAAAACAGCTTCATGGGTATAGTTTGAGGGTGGGTGATCAGAAAACGTTTACGAATAATGCATTGATGGCAATGTATGCGAAATTGGGAAGAGTTGATGACTCAAAAGCTTTGTTTGAATCATTCGTGGACCGTGATATGGTCTCGTGGAACACCATGATAAGCTCATTCTCGCAAAGTGATCGATTTTCTGAGGCGTTGGCCTTCTTCCGCCTCATGGTTCTTGAAGGGGTTGAGCTTGATGGGGTTACAATTGCGAGTGTTCTTCCTGCCTGTTCCCATTTGGAGAGGTTGGATGTTGGAAAGGAAATTCATGCGTATGTCTTGAGAAACAATGATCTGATTGAAAATTCTTTCGTGGGTAGCGCACTAGTCGACATGTACTGCAATTGCCGTCAGGTTGAGAGTGGCCGGAGGGTTTTTGACCATATCTTAGGACGGCGAATTGAGCTTTGGAATGCCATGATTTCAGGTTATGCTCGAAATGGGCTTGATGAGAAGGCCTTGATTCTCTTCATTGAGATGATAAAGGTAGCTGGGCTTCTCCCGAACACCACCACAATGGCAAGTGTTATGCCAGCTTGTGTACACTGTGAAGCATTCTCTAACAAAGAAAGCATCCATGGGTATGCGGTAAAGTTGGGTTTCAAGGAGGACCGGTATGTCCAGAATGCACTCATGGACATGTACTCAAGGATGGGGAAGATGGACATTTCAGAGACTATATTTGACAGCATGGAGGTTAGGGATAGAGTGTCTTGGAACACCATGATCACAGGTTACGTTCTTTCTGGCCGCTATAGCAATGCACTTGTTCTGCTACATGAGATGCAGAGAATGGAAAACACAAAGGACGTGAAGAAGGATGATAACGACGATGAGAAAGGAGGTCCTTATAAACCAAATGCAATCACGCTAATGACAGTCCTTCCTGGTTGTGCAGCCCTGGCAGCAATAGCAAAGGGGAAAGAAATTCATGCCTATGCCATTAGAAACATGCTGGCATCAGACATCACTGTGGGAAGCGCATTAGTTGATATGTATGCAAAATGCGGCTGCTTGAACCTATCTAGAAGGGTGTTCAATGAAATGCCCAACAAAAATGTCATCACATGGAATGTCCTCATCATGGCTTGTGGAATGCATGGAAAAGGGGAGGAAGCTTTGGAACTATTCAAAAACATGGTGGCAGAAGCAGGCAGGGGTGGGGAAGCAAAACCTAATGAAGTAACATTTATTACGGTCTTCGCAGCATGTAGTCACTCTGGGCTGATAAGTGAAGGCCTAAACTTGTTCTATAGAATGAAACATGATCATGGAGTAGAACCCACATCAGATCACTACGCTTGTGTTGTAGACTTGCTTGGTCGAGCAGGTCAACTGGAGGAAGCTTATGAACTTGTTAATACCATGCCTGCTGAGTTTGACAAAGTTGGTGCTTGGAGTAGCTTGCTTGGTGCCTGTCGAATTCACCAGAATGTGGAACTAGGGGAAGTTGCAGCCAAAAATCTGCTTCATCTAGAACCCAATGTGGCTAGCCATTATGTTCTACTCTCTAATATCTACTCATCTGCTGGGCTCTGGAACAAGGCCATGGAAGTTCGGAAGAACATGAGGCAAATGGGAGTGAAAAAAGAACCTGGGTGCAGTTGGATTGAGTTTAGAGATGAAGTACATAAGTTCATGGCCGGGGATGTATCTCATCCACAAAGTGAGCAACTCCATGGGTTCCTGGAGACATTGTCAGAGAAGATGAGAAAGGAGGGGTACGTGCCTGACACTTCTTGTGTTCTTCACAATGTTGATGAAGATGAGAAGGAAAATCTACTATGTGGGCATAGTGAGAAACTGGCAATAGCATTTGGTATCCTGAACACCCCTCCCGGCACTACCATTCGAGTAGCTAAGAACCTTAGAGTTTGTAATGACTGCCATGCTGCTACAAAGTTTATCTCAAAAATCATGGAGAGGGAGATCATTGTAAGGGATGTTAGGAGGTTCCATCATTTCAAGGAGGGAACTTGTTCCTGTGGGGATTATTGGTGA | 2691 | 0.4649 | MSSCNCHQLLSPLPLALPSSHSPPSLQTQPPPSIQKPTASPLTSKTPPKPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW* | 897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0098 | 896 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 61 | 216 | - | - | |
| Vvi1g0098 | 896 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Vvi1g0098 | 896 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 583 | 613 | IPR002885 | - | |
| Vvi1g0098 | 896 | NCBIfam | pentatricopeptide repeat | 585 | 612 | IPR002885 | - | |
| Vvi1g0098 | 896 | NCBIfam | pentatricopeptide repeat | 160 | 192 | IPR002885 | - | |
| Vvi1g0098 | 896 | NCBIfam | pentatricopeptide repeat | 263 | 296 | IPR002885 | - | |
| Vvi1g0098 | 896 | NCBIfam | pentatricopeptide repeat | 467 | 495 | IPR002885 | - | |
| Vvi1g0098 | 896 | NCBIfam | pentatricopeptide repeat | 366 | 400 | IPR002885 | - | |
| Vvi1g0098 | 896 | Gene3D | Tetratricopeptide repeat domain | 327 | 423 | IPR011990 | GO:0005515 | |
| Vvi1g0098 | 896 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 416 | 833 | IPR046960 | GO:0003723|GO:0009451 | |
| Vvi1g0098 | 896 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 158 | 192 | IPR002885 | - | |
| Vvi1g0098 | 896 | Gene3D | Tetratricopeptide repeat domain | 507 | 616 | IPR011990 | GO:0005515 | |
| Vvi1g0098 | 896 | Gene3D | Tetratricopeptide repeat domain | 61 | 221 | IPR011990 | GO:0005515 | |
| Vvi1g0098 | 896 | Gene3D | Tetratricopeptide repeat domain | 617 | 775 | IPR011990 | GO:0005515 | |
| Vvi1g0098 | 896 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | E motif | 706 | 768 | IPR046848 | - | |
| Vvi1g0098 | 896 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
| Vvi1g0098 | 896 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 323 | 420 | - | - | |
| Vvi1g0098 | 896 | Gene3D | Tetratricopeptide repeat domain | 228 | 326 | IPR011990 | GO:0005515 | |
| Vvi1g0098 | 896 | MobiDBLite | consensus disorder prediction | 13 | 60 | - | - | |
| Vvi1g0098 | 896 | Pfam | DYW family of nucleic acid deaminases | 804 | 896 | IPR032867 | GO:0008270 | |
| Vvi1g0098 | 896 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 363 | 398 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 663 | 686 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 160 | 189 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 439 | 463 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 467 | 495 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 367 | 392 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat | 235 | 260 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat family | 582 | 634 | IPR002885 | - | |
| Vvi1g0098 | 896 | Pfam | PPR repeat family | 261 | 307 | IPR002885 | - | |
| Vvi1g0098 | 896 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 228 | 322 | - | - | |
| Vvi1g0098 | 896 | FunFam | Pentatricopeptide repeat-containing protein chloroplastic | 619 | 896 | - | - | |
| Vvi1g0098 | 896 | FunFam | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic | 507 | 618 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0098 | Vvi-Chr1 | 961115 | 963805 | Dispersed/Transposed |