Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0096 ATGGCCTCTTCTCCTCTTCTCCACCACCCAACCCACTGCTTCATCTCCAGTAACCAGGGTTTCTGCAATGGGTTGTCTTCATCACGACCCAACTACTCTTGGATGCGCGGCTCTGGAAATAACATTAGACCCATCAAAGCTGCCGTAGAGATGCCTCCTTTTCCACTCTTTGAACCTCCACAAATTGAAAGTGACACACCTTCTCAGTTGGAGCCTGCAGACCCTGATTTCTACAAGATAGGGTATGTTCGGAGTGTTCGAGCATACGGTGTTGAATTCAAGGAAGGGCCTGATGGATTTGGAGTCTATGCCTCTAAAGATGTTGAACCACTTCGCAGAGCAAGGATGATCATGGAAATTCCACTGGAATTGATGTTAACAATAAGAAAAAAGCTCCCATGGATGTTTTTCCCAGACATCGTACCAGTGGGACATCCTATATTTGATATTATCAACTCAACCAATCCGGAGACAGATTGGGATCTGCGGTTAGCATGCCTTCTTTTGTTTGCATTTGATCAAGAGGATAACTTCTGGCAGCTATATGGTGATTTTTTACCTAGTGAAGGAGAGTGCACTAGCTTGCTTCTAGCTAAAGAGGAGGACCTTTTGGAGCTGCAGGATCCGAAATTGGCTTCAACTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAATGAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAAGGACCGCATGCTTGAGGTGATGATAAATGCTGGACAAAGGATTAAGAAAGGGGAGGAGATGACTGTCAATTACATGAGTGGGCTGAAAAATGACATGTTAATGCAAAGATATGGTTTTTCATCCCCTGTGAATCCTTGGGATGTCATCCAGTTCTCTGGAAATGCACAGATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTATCATAACAGTCGGTTATCTAATAATGGAGATAGTTTTGTTGATGGAGCGGTAATAGCAGCAGCAAGAACATTGCCCACTTGGTCAGATGGGGATGTGCCTCCAATGCCAAGCATGGAGCGGAAAGCTGTGAAGCAGTTACAAGAAGAATGTCAACAGATGCTTTTGGAATTCCCCACAACTTCGGAGCAAGATCAAAAAATTCTAGATTCTATGACAGAAGAAAGGAGAACACTTGAAGCTGCAATCAAGTACAGATTGCACAGGAAGTTGCTGATAGAGAAGGTCATCCAGGCATTGGACATTTACCAAGAGCGGATATTGTTTTGA 1449 0.4341 MASSPLLHHPTHCFISSNQGFCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLFEPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMIMEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDNFWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLKIKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHLDSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAVKQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQERILF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0096 482 CDD SET_LSMT 90 337 - -
Vvi1g0096 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 47 458 - -
Vvi1g0096 482 Gene3D - 356 479 IPR036464 -
Vvi1g0096 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Vvi1g0096 482 FunFam Plastid transcriptionally active 14 359 479 - -
Vvi1g0096 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Vvi1g0096 482 Pfam Rubisco LSMT substrate-binding 411 463 IPR015353 -
Vvi1g0096 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Vvi1g0096 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Vvi1g0096 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Vvi1g0096 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 479 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi1g0096 SET 5.9e-20 No_clan