Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0094 ATGTCTCGGATATGTGTGAAGAATTTGCCAAAATACGTGGCTGAGGACCGCCTCAGAGATCATTTTTCTCAAAAAGGAGAAATAACCGACGCCAAGCTTATGAGAACCAAAGAGGGTAAAAGTAGGCAGTTCGCATTTATTGGGTTTCGGACTGAGCAGGAAGCTGAAGAAGCTCTGAAATTCTTCAACAACTCGTACCTTGATACTTGCAGAATTACCTGTGAGATTGCTCGTAAGGTAGGGGATCCAGACATCCCTCGTCCATGGAGTCGATATTCTTTGAAGAAAGAAGATAAATCAACTGAAGTGGAGAAGAAAGATAGGGGTACTAAAAATTCGAGCCATGTGGGTTCTAAAGGAGAGAAATCGAAAAAGGGCAGTGAGAATGATGATCCTCAGCTTCAGGAGTTTCTTCAGGTTATGCAACCAAGGGTTAAGTCGAAAATGTGGGCAAATGATACATTGGGAGTTCCCCCTCTTGATCATAATGGCAAAAACAGTGACAAGCAGACTCAATCTATGAGGGAAGGCAGAGATGAGGCAGTTCAAATGCAAGCTGATTTAGATGAATCTGATGAAAGAGAAGATGAGTTATCAGACAGTCAGATGGATACGAAACCTAACAATCTAGCTCATGATGAAGTCATTTCAGACATGGATTACTTCAAGAGTAGAGTGAAGAAGAAGTGGTCAGATTCAGAAAGTGATGATGTTTCAGAAAGTGGTGATGATTCAGAAAGTGATGACGATTCAGAAAGTGGTGATGATAATGATGACAACATTGATTCTTTTAATAAGAAAAGCGTTGAGAGTCAAGATGTTCAACAAGTATGTCAGCATGGACAGCACAACACCATTAAAAACGATGTCGCCCAAGAGAAGGTTGATGATGAGGACCATTCTGAAGAATCTGATGGTGAAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACTGAGGATGAACTTGAGGAGCTCTTTAGCAAATTTGGCAATGTATCACAGGTTCATCTTGTTGTGAATAAAGATACAAAACGATCAAAGGGAATTGCCTATGTTCTTTTCACACTTCCTGAATCTGCAGTGAGGGCATTGGAAGAATTAGACAATTCAATTTTCCAAGGCAGATTATTGCACGTCATGCCAGCGAGAGAAAAAAAACCTTCTGAGAAACAGGAGGCCAATGCTTCTGCAAGCCAATCTTCAAAAACTTTAAAGCAAAAGAGGGAGGAGGAAAAGAAGGCATCGGAAGCTAGTGGTGATACACGAGCATGGAACAGTTTGTTTATGCGCACTGATACAGTTGTTGAAAATATCGCTAGGAAATATGGTATAAGTAAAAGTGATTTACTTGACTCACAAGCCGATGATCTCGCCGTACGTATTGCATTGGGAGAAACTCAAGTGATAGCGGAGACAAAGAAGGCTCTTATAAATGCTGGAGTAAATATAGCCTCTTTAGAGGAATTTGTTGCTGGGAAAACTGAGGGTGCAAAGAGAAGCAACCACATTCTACTAGTGAAGAACTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGGTGGTTTTCCTTGAACCAGCGGAAGCTCGTGCTGCTTTCAGAGGTTTAGCATACAAGCGTTACAAGGATGCACCATTATATTTGGAATGGGCTCCTGGAAATATTCTCAGTCAAAATGCACCTTATGAGAATGATGCAAGTAGAAGTGTCATTGTTGGTGAACGTGATGTCAAGAGGATGTTACTAGAACAACAGGTGGAAGGAATATCAGATGTGGATATTGATCCTGATAGAGTTGAGTCACGGTCCCTGTTTGTCAAGAACCTAAATTTTAAGACGTCTGGTGAGAGTTTGAGAAAGCATTTTAGTGAACACATGAAGGAGGGAAAAATCCGAAGTGTCAGGGTGAAGGAGCACTTGAAAAATGGGAAGAATGTGTCAATGGGTTTTGGTTTTATAGAGTTTGATTCAGTTGAGACAGCAGTCAATGTTTGCAGCAATTTACAGGGTACTGTTCTGGATGGTCATGCTCTCATCCTGCAACTATGTCGTGCGAAGAAGGATGAACAAGTGCTGAAAAAGGTTGATAAGGATAAGAGTTCAACAAAATTAATTGTGAGAAATGTTGCTTTTGAGGCAACAGAGAAAGATCTGAGACAGTTGTTTAGTCCATTTGGCCAGATCAAGAGCTTAAGACTTCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCATTTGTTGAATTTGTCACAAAGCAAGAGGCACAGAATGCTCTGCAAGCTCTTTCAAGCACTCATCTGTACGGTCGGCATCTGGTCATGGAGAGAGCCAAGGAAGGTGAGAGCTTGGAAGAATTACGGGCTAGAACAGCTGCTCAGTTTACAGATCAGAATCCGACCAAGTTATCCAGGAAAAGGAAGCACATGGCCGCATTGGATGAAGGCACTGTTAAGTTTGAGAGGATTGCAGATTAG 2601 0.4141 MSRICVKNLPKYVAEDRLRDHFSQKGEITDAKLMRTKEGKSRQFAFIGFRTEQEAEEALKFFNNSYLDTCRITCEIARKVGDPDIPRPWSRYSLKKEDKSTEVEKKDRGTKNSSHVGSKGEKSKKGSENDDPQLQEFLQVMQPRVKSKMWANDTLGVPPLDHNGKNSDKQTQSMREGRDEAVQMQADLDESDEREDELSDSQMDTKPNNLAHDEVISDMDYFKSRVKKKWSDSESDDVSESGDDSESDDDSESGDDNDDNIDSFNKKSVESQDVQQVCQHGQHNTIKNDVAQEKVDDEDHSEESDGERMDSGNPLLSSKDGKDVLETGRLFVRNLPYTATEDELEELFSKFGNVSQVHLVVNKDTKRSKGIAYVLFTLPESAVRALEELDNSIFQGRLLHVMPAREKKPSEKQEANASASQSSKTLKQKREEEKKASEASGDTRAWNSLFMRTDTVVENIARKYGISKSDLLDSQADDLAVRIALGETQVIAETKKALINAGVNIASLEEFVAGKTEGAKRSNHILLVKNLPYGSSEGELAKMFGKYGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPGNILSQNAPYENDASRSVIVGERDVKRMLLEQQVEGISDVDIDPDRVESRSLFVKNLNFKTSGESLRKHFSEHMKEGKIRSVRVKEHLKNGKNVSMGFGFIEFDSVETAVNVCSNLQGTVLDGHALILQLCRAKKDEQVLKKVDKDKSSTKLIVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEFVTKQEAQNALQALSSTHLYGRHLVMERAKEGESLEELRARTAAQFTDQNPTKLSRKRKHMAALDEGTVKFERIAD* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0094 866 MobiDBLite consensus disorder prediction 168 188 - -
Vvi1g0094 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 406 IPR000504 GO:0003723
Vvi1g0094 866 FunFam RNA-binding motif protein 19 1 100 - -
Vvi1g0094 866 MobiDBLite consensus disorder prediction 405 440 - -
Vvi1g0094 866 SUPERFAMILY RNA-binding domain, RBD 521 618 IPR035979 GO:0003676
Vvi1g0094 866 MobiDBLite consensus disorder prediction 85 131 - -
Vvi1g0094 866 PANTHER RNA-BINDING MOTIF PROTEIN 14B 291 443 - -
Vvi1g0094 866 SMART rrm1_1 3 75 IPR000504 GO:0003723
Vvi1g0094 866 SMART rrm1_1 646 724 IPR000504 GO:0003723
Vvi1g0094 866 SMART rrm1_1 329 402 IPR000504 GO:0003723
Vvi1g0094 866 SMART rrm1_1 746 817 IPR000504 GO:0003723
Vvi1g0094 866 SMART rrm1_1 525 592 IPR000504 GO:0003723
Vvi1g0094 866 MobiDBLite consensus disorder prediction 237 258 - -
Vvi1g0094 866 Gene3D - 1 133 IPR012677 -
Vvi1g0094 866 Gene3D - 284 443 IPR012677 -
Vvi1g0094 866 CDD RRM4_RBM19_RRM3_MRD1 524 595 - -
Vvi1g0094 866 MobiDBLite consensus disorder prediction 211 236 - -
Vvi1g0094 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 524 596 IPR000504 GO:0003723
Vvi1g0094 866 SUPERFAMILY RNA-binding domain, RBD 324 411 IPR035979 GO:0003676
Vvi1g0094 866 CDD RRM5_RBM19_like 646 726 IPR034423 -
Vvi1g0094 866 SMART rrm2_1 746 817 IPR003954 GO:0003676
Vvi1g0094 866 SMART rrm2_1 3 75 IPR003954 GO:0003676
Vvi1g0094 866 SMART rrm2_1 329 402 IPR003954 GO:0003676
Vvi1g0094 866 FunFam Multiple RNA-binding domain-containing protein 1 739 845 - -
Vvi1g0094 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 745 821 IPR000504 GO:0003723
Vvi1g0094 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Vvi1g0094 866 Gene3D - 515 609 IPR012677 -
Vvi1g0094 866 Gene3D - 737 845 IPR012677 -
Vvi1g0094 866 MobiDBLite consensus disorder prediction 267 286 - -
Vvi1g0094 866 FunFam Multiple RNA-binding domain-containing protein 1 515 617 - -
Vvi1g0094 866 MobiDBLite consensus disorder prediction 425 440 - -
Vvi1g0094 866 MobiDBLite consensus disorder prediction 153 321 - -
Vvi1g0094 866 CDD RRM1_MRD1 2 77 - -
Vvi1g0094 866 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Vvi1g0094 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 645 728 IPR000504 GO:0003723
Vvi1g0094 866 MobiDBLite consensus disorder prediction 85 132 - -
Vvi1g0094 866 SUPERFAMILY RNA-binding domain, RBD 741 823 IPR035979 GO:0003676
Vvi1g0094 866 Gene3D - 610 736 IPR012677 -
Vvi1g0094 866 FunFam Nucleotide/nucleic acid binding protein 641 736 - -
Vvi1g0094 866 CDD RRM6_RBM19_RRM5_MRD1 745 819 - -
Vvi1g0094 866 SUPERFAMILY RNA-binding domain, RBD 631 731 IPR035979 GO:0003676
Vvi1g0094 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Vvi1g0094 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 400 IPR000504 GO:0003723
Vvi1g0094 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 747 814 IPR000504 GO:0003723
Vvi1g0094 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 526 587 IPR000504 GO:0003723
Vvi1g0094 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 647 721 IPR000504 GO:0003723
Vvi1g0094 866 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0094 Vvi-Chr1 930504 944969 Transposed