Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0093 ATGGTTTCTTCCATGGCGGGTCTCAGACATCAGCTGGGTCTGTTCCTGGTGGTGGGTATGGTGGTGATGAGGTGTGCGTGGGGGAGGTTCGTGGTGGAGAAGAACAGCATCAGTGTTCTGGCTCCCCTTGATATGCGTTCAAAGCATGATGGGGCGATTGGGAACTTTGGTATTCCTGAATATGGAGGATCCATGGTGGGGTCTGTTGTTTATCCTCAAAAGGGCTCTTTTGGGTGTGTGCCTTTTGAGGGTGACAAGCCCTTCAAGTCTCGCTCCTCTCCCACCACTATTCTTCTTCTTGACCGTGGAGAGTGCTACTTTGCCTTGAAGGCATGGAATGCTCAACAGGCAGGAGCTGCAGCAGTTCTAGTGGCTGATAGCATAGATGAGCCTCTCATAACCATGGATTCTCCAGAGGAGAGCACTGATTCAGACGGCTATGTGGAGAAGCTTAGGATCCCATCAGCCTTAATAGACCGAGCTTTTGGTGAAAATTTGAAGCAGGCCTTGAAGAAAGGTCAAGATGTTTTGGTAAAATTAGACTGGACAGAGTCAATGCCCCACCCAGATGAGAGGGTCGAGTATGAGCTCTGGACTAACAGCAATGATGAGTGTGGGACTCGTTGTGATGAGCAGATGAACTTTGTGCAGAACTTCAAGGGCCACGCCCAGATTCTCGAGAAGCTGGGCTACACTCAATTCACACCACATTATATAACTTGGTACTGTCCTCAAGCTTTTGTCCTTAGCAACCAATGCAAGTCTCAATGCATCAACCATGGAAGGTACTGTGCACCTGATCCAGAGCAAAATTTTGGAGAAGGGTACCAAGGAAAAGATGTGGTGTTTGAGAACTTGAGACAGCTTTGTGTGCATAGGGTTGCCAATGAGAGCAACCGGTCTTGGGTTTGGTGGGACTATGTCACTGATTTTCATATCAGATGTTCAATGAAGGAGAAGAGGTATAGCAAAGAATGCGCTGAGGATGTCATGAAATCACTTGATCTGCCTATTGACAAGATCAAAAAATGCATGGGCAATCCTGAAGCTGATGTGGATAATGAGGTATTGAAAACCGAGCAAGAACTCCAGGTTGGCCGAGGATCTCGTGGTGATGTTACCATCTTGCCAACACTGGTTGTTAATAACATCCAATACCGAGGAAAACTGGAGAGAACTGCTGTGCTGAAGGCCATTTGCGCTGGATTTAAGGAGACCACTGAACCTCAAGTATGTTTAAGTGGAGATCTTGAGACCAATGAGTGCCTTGAAAGGCATGGTGGCTGTTGGCACGATTCACGTTCTAACATAACTGCCTGCAAGGACACATATCGGGGAAGAGTTTGCAAATGCCCAGTTGTGGATGGTGTTCAGTACAGAGGAGATGGTTACGTCTCTTGTGAAGCTTTCGGGCCTGCAAGGTGCGCGATGAACAATGGAGGTTGCTGGTCAGACACCAAAAATGGAAAAACTTTCTCAGCTTGCTCAGATTCTGAGGTAACTGGCTGTCAGTGCCCACATGGCTTCCAAGGAGATGGCCATAAATGTGAAGATGTTAATGAATGCAAGGAACGTCTCGCTTGTCAATGTGACGGTTGCACTTGTAAGAACACATGGGGTGGATATGACTGCAAGTGTAAGGGCAACCTTCTGTACATAATGGAGCAAGATACTTGTATTGAAAGAAGTGGTTCTAAATTCGGATGGTCCCTCGGCTTCTTGGTCCTAGCTGCTCTGGTGGGTGCTGGTATAGCTGGTTATATATTCTACAAATACAGGCTCCGGTCTTACATGGACTCAGAGATCATGGCCATCATGTCACAGTACATGCCTCTTGACAACCACAACAACAACAACGAAGTCCCAACCGAGGCCCAGGCTCTGCGACCAGGCTCATCAGTATGA 1905 0.4751 MVSSMAGLRHQLGLFLVVGMVVMRCAWGRFVVEKNSISVLAPLDMRSKHDGAIGNFGIPEYGGSMVGSVVYPQKGSFGCVPFEGDKPFKSRSSPTTILLLDRGECYFALKAWNAQQAGAAAVLVADSIDEPLITMDSPEESTDSDGYVEKLRIPSALIDRAFGENLKQALKKGQDVLVKLDWTESMPHPDERVEYELWTNSNDECGTRCDEQMNFVQNFKGHAQILEKLGYTQFTPHYITWYCPQAFVLSNQCKSQCINHGRYCAPDPEQNFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEDVMKSLDLPIDKIKKCMGNPEADVDNEVLKTEQELQVGRGSRGDVTILPTLVVNNIQYRGKLERTAVLKAICAGFKETTEPQVCLSGDLETNECLERHGGCWHDSRSNITACKDTYRGRVCKCPVVDGVQYRGDGYVSCEAFGPARCAMNNGGCWSDTKNGKTFSACSDSEVTGCQCPHGFQGDGHKCEDVNECKERLACQCDGCTCKNTWGGYDCKCKGNLLYIMEQDTCIERSGSKFGWSLGFLVLAALVGAGIAGYIFYKYRLRSYMDSEIMAIMSQYMPLDNHNNNNEVPTEAQALRPGSSV* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0093 634 Gene3D - 27 189 - -
Vvi1g0093 634 FunFam vacuolar-sorting receptor 1 412 468 - -
Vvi1g0093 634 Pfam PA domain 67 166 IPR003137 -
Vvi1g0093 634 Gene3D Laminin 471 560 - -
Vvi1g0093 634 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 15 622 - -
Vvi1g0093 634 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Vvi1g0093 634 SMART egfca_6 518 560 IPR001881 GO:0005509
Vvi1g0093 634 FunFam Vacuolar-sorting receptor 1 27 189 - -
Vvi1g0093 634 SUPERFAMILY PA domain 63 173 IPR046450 -
Vvi1g0093 634 CDD EGF_CA 518 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0093 Vvi-Chr1 924765 929421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0093 12 626 Miscellaneous Gene Families AT1G30900 72.033 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0093 - - vvi:100252664 1314.29