Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1439 ATGATTCGAACACAGGCAGTGGGAGTGGGAAAAATTCCACACCCTCTCTCCAGTCACCATAGCGTGAGTCTGAGCCACTTCACCAAACCACTCAGATTCGCATTCTCCCATTCGTTTCCAGCTGTGGCCATGTCCCCCGTTCCCCGGAAGAGGAGGAGGAGGAGTTCCAAAAACCCATCCACATTCCTATCCTCATCCTTATCTCTTGATGACAACTTCAATATCACGTCTTCTTCCGCTGCTGTCACCGCTTCTTCCCCGTCTTCACCACCTCCGCAGCCCGAAAAGGAGGAGGAGGATGATGTAAAGAGAAAGGCCCCTGACATTCCCACGCTTTTCAGGAGATTCTGGAAAGTAGCGGCTCCGTACTGGTGGTCAGACGACAAGGTACAAGCCAGATTGCAGCTGGCGGCTGTGTTTGCGCTCACTCTAGGAACCACTGGGATCAGTGTCGGTTTCAATTTCCTGGGCCGCGACTTCTACAATGCCCTCGCCAATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCGTTCTTTGTGTTGAGGGATTATGCCAGAGAAATTCTTGCTTTAAGATGGAGATCTTGGATGACAAGCTATTACATGGAACGCTATCTAAAGAATTGGACATTCTACAAAATACAGTCCCAATCCATAATTGATAATCCAGATCAGCGGATTGTTGACGATTTAAGTTCCTTCACAGGAACAGCGCTTTCATTCTCTCTGGCATTTTTTAATGCTGCTGTAGACTTGATATCATTTAGTAACATCCTGTATGGCATCTACCCACCGCTTTTTGTTGTACTTCTTGTATATTCAATTGGTGGAACAGCTATTAGTGTTTTTCTTGGAAGGGGACTGGTAAACCTAAATTTCTTGCAAGAGAAGAAAGAAGCAGATTTTCGTTATGGACTTGTGCGTATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCCAATTGTTGATTTCTTCTAGAAATCTAGAATTCTTTACCAGTGGCTACCGCTACCTTATTCAGATTCTTCCAGCTGCAGTTGTTGCTCCGATGTATTTCTCAGGAAAAATTGAGTTTGGTGTCATAAATCAGTCTGTATCTGCTTTCAATCACATCCTTGGTGATTTTTCCCTCATTGTATACCAGTTTCAGGCGATAAGTGCCTTCTCAGCTGTCATTGATCGACTTGGTGAATTTGATGATATTCTGGATAACAGCAGCTCTAAAGATCTCTCTGACCCTTCAGAAGAAATTAATCTTGTGTACGATGATGTAAAAAGTTTGACCTTGTTGGAGTCTAATGGATCTATGGCCATGGATAAGTGTCAAAAGTTACTTGACATTGAGAATTTGACTCTCCTGACACCAAAAAGTAAAACTGCACTTATTTGGGATTTATCGTTGGAGATATATGAAAAGGATCATTTGCTGGTAACAGGACCTAGTGGGAGTGGTAAGACTTCTTTGTTACGAGCTCTGGCTGGTCTTTGGAGTACTGGAAGAGGAAAAATCACATTTTCTGTGAAAGGTGATGAAGATCCTCTGCTGGGAGCGGCTCCTCTTGAAGCAACTCCTTCACAAGATACATATCCGGGAGTTGAACAACCCAAAAACAAAGATTCTAGAGGCATATTTTTCCTTCCTCAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGGCACTCTTCCTTTCTTGATGGGGGTATCTACCTTGGAAAATGAGGGAGAAAATCCTAGGAAGCCCACAACAGATGATATAATACGGGTTCTAGAGGACGTTCGCCTTGGCTATATACTTTCTCGTTTTAATAGTTTAGATTCCACATATGAGTGGTCCAGTGTTCTTTCCCTTGGTGAGCAGCAACGCCTTGCATTTGCACGTCTCCTGCTTTCAAAACCAAATTTGGTTCTACTAGATGAATCCACCAGCGCCTTGGATGAAGCTAATGAGGCTCACTTATACCAGCAAATTGAAGCTGCAGGTATAACATATGTTAGCATTGGCCATCGAAGAACCCTTTATGGTTACCACAATAGGCGCTTACATATATCTGCAGCAGATCCTAACAGTACACAACGTAATTGGTACATTGAGCCCATCAATCAGGACACCATGTACAATTTGTCAAAGCTGTAG 2298 0.4334 MIRTQAVGVGKIPHPLSSHHSVSLSHFTKPLRFAFSHSFPAVAMSPVPRKRRRRSSKNPSTFLSSSLSLDDNFNITSSSAAVTASSPSSPPPQPEKEEEDDVKRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALRWRSWMTSYYMERYLKNWTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLAFFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYSGEESEMQLLIQRFRSAFENLTQLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDILDNSSSKDLSDPSEEINLVYDDVKSLTLLESNGSMAMDKCQKLLDIENLTLLTPKSKTALIWDLSLEIYEKDHLLVTGPSGSGKTSLLRALAGLWSTGRGKITFSVKGDEDPLLGAAPLEATPSQDTYPGVEQPKNKDSRGIFFLPQRPYMVLGTLRQQLLYPTWAEDVIPVTDGDEPDGTLPFLMGVSTLENEGENPRKPTTDDIIRVLEDVRLGYILSRFNSLDSTYEWSSVLSLGEQQRLAFARLLLSKPNLVLLDESTSALDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDTMYNLSKL* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1439 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 737 IPR027417 -
Vvi19g1439 765 Gene3D - 454 741 IPR027417 -
Vvi19g1439 765 SMART AAA_5 504 741 IPR003593 GO:0016887
Vvi19g1439 765 Pfam ABC transporter transmembrane region 2 128 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1439 765 CDD ABCD_peroxisomal_ALDP 480 738 - -
Vvi19g1439 765 SUPERFAMILY ABC transporter transmembrane region 115 432 IPR036640 GO:0005524|GO:0016020
Vvi19g1439 765 Gene3D ABC transporter type 1, transmembrane domain 93 434 IPR036640 GO:0005524|GO:0016020
Vvi19g1439 765 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 420 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g1439 765 ProSitePatterns ABC transporters family signature. 669 683 IPR017871 GO:0005524|GO:0016887
Vvi19g1439 765 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 478 765 IPR003439 GO:0005524
Vvi19g1439 765 MobiDBLite consensus disorder prediction 80 104 - -
Vvi19g1439 765 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 65 751 - -
Vvi19g1439 765 Pfam ABC transporter 497 697 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1439 Vvi-Chr19 23874878 23888873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1439 86 760 Acyl Lipid Metabolism Gene Families AT1G54350 69.174 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1439 - - vvi:100258729 1426.38