Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1430 ATGCCGCTCTTCATTTCCGACGAAGAGTACTCCCGGTGCTCAAACGACGTCGCTTTGGTCGCCGAGAAGGCGGATTCCTTCATCAGAGACCTCTACAACGAGCTCCAGACCGTCAAAGCTCAGGCCGATGCCGCCTCCATCACCGCCGAGCAGACTTGCTCTCTTCTTGAGCAGAAGTACATCTCTCTCTCCCAAGAATTCTCCAAACTCGAATCTCAAAACGCCCAACTCAACTCCTCTCTTCAAGAACGACTCTCAGAGCTCGCCCAAATCCAAGCTGAAAAGCACCAGCTCCACCTCAAATCCATTGAGAAAGATGGAGAGATTGAGCGGTTGTCTACTGAGGAGTCGGAGCTTCATAAATCGAAAAGGCAGTTGCTTGAGTTTTTGGAGCACAAGGATTTGGAGATTAGTGAGAAAAATGCTACAATCAAAAGTTACTTGGATAAGATTGTTAACATGACAGACACTGCTGCTCTAAGGGAGGCTCGACTGAGTGATGCCGAGGCAGAGTTGTCACGTTCTAAGGCTGCATGTGCACGTCTTTTACAGGAGAAAGAACTTATTGAAAGGCATAATGTTTGGCTTAATGACGAGTTAACATCTAAAGTTAAGAGTCTCACTGAGCTACGAAGAACACATGTTGAACTTGAGGCAGACATGTCTACTAAGCATTCAGATGTTGAGAGACGATTGAATGAATGCTCTAGCTCTTTGAAATGGAATAAAGAAAGAGTGAAAGAGCTAGAAATGAAGTTGACATCAATGCAACAGGAGTTGTGCTCATCAAAAGATGCTGCTGCAGCCAATGAACAGAGGCTTTCTGCTGAAATCATGACTGTAAACAAACTTGTTGAACTGTACAAAGAGAGTTCAGAGGAATGGTCCAGAAAGGCAGGAGAGCTTGAGGGTGTGATCAAAGCTTTGGAAACACATTTGATTCAAGTTGAAAATGACTATAAAGAGAGACTTGAAAAGGAAGTATTTGCCAGAAAGGAACTCGAAAAGGAGGCAGCAGATTTGAAAGGGAAACTCGAAAAGTGTGAGGCTGAGATGGAAACTAGTAGAAGAGCAAATGAGCTAAATCTTCTTCCACTCAGCAGTTTAATTACTGGAACCACATGGTTGGATTCTTTTCAAACCAATGACATGGTTGAAGATAACTGCATGCTTGTCCCCAAGATTCCAGCGGGTGTTTCAGGGACTGCATTAGCAGCTTCGCTTCTGCGCGATGGCTGGAGTCTGGCTAAGATGTATAGCAAATATCAAGAGGCTGTTGATGCCTTGCGACATGAGCAATTAGGAAGGAAGCACTCTGAAGCAATGTTGGAACAGGTCCTGCATGAAATAGAGGAGAAAGCTGTAGTCATTTTGGATGAGAGAGCGGAACATGAGAGAATGGTTGAAGGATACTCTGCAATCAACCAAAAACTGCAGCAATCTCTTTCTGAGCAGTCGAATTTGGACAAAACAATCCAGGAACTTAAGGCTGACTTGAGGCAGCAAGGACGTGACTACGCTGTGGCTCAGAAAGAGATTGTTGACCTGGAGAAACAGGTGACGGTGCTTTTAAAGGAATGCCGAGATATACAGCTTCGTTGTGGATTGGTGGGTCATGATTTCGCTGATAACGGTACAATTACTGCTGCTGATGAGATGAATGCAGAGTCTAATTCTGACGAAGTAATTTCAGAACGGCTTTTGACTTTTAGGGATATAAATGGATTAGTTGAGCAGAATGTCCAGCTCCGAAGCCTTGTACGCAGCCTTTCTGACCAACTTGAGGATAAAGATATGGAGTTGAAGGAGAAGTTTGAACTGGAGCTCAAAAAGCATACTGATCAGGCTGCCTCTAAAGTTGCAGCAGTGTTAGAAAGAGCTGAAGAGCAAGGGCGCATGATTGAATCACTTCACACCTCTGTTGCAATGTACAAACGGTTGTATGAGGAGGAACATAAACTTCATTCATCTTTCCCCCATTCTGCAGAAGCAGCTCCAGAAAATGGAAGGAAGGACCTCATGCTTCTTCTTGAAGGTTCTCAGGAAGCTACGAAAAAGGCCCAAGAACAAGCTGCTGAACGTGTCAGATCTCTTCAAGAGGATTTGGCGAAGTCTAGGAGTGAGATCATATCATTGCGATCAGAGCGTGACAAATTTGCTTTGGAAGCAAATTTTGCACGAGAGAGACTTGAAAGCTTTATGAAAGAATTTGAACATCAGAGAGATGAAGCTAATGGCATCCTAGCAAGAAATGTGGAATTCTCTCAGCTAATAGTTAATTACCAACGAAAGATACGTGAAAGTTCTGAATCTTTGCATACCGTCGAGGAACTTTCTCGAAAGCTAACTATGGAGGTGTCTTTTTTGAAGCATGAAAAAGAAATGTTGTCAAATTCTGAAAAAAGAGCTTCTGATGAAGTTCGTAGTTTGTCTGAGAGGGTCCACCGTCTGCAGGCGACTTTGGACACTATCCATAGCACTGAGGAATTTCGTGAGGAGGCTAGAACTGTGGAGAGGAGAAAACAAGAGGAGCATATAAGACAGATTGAGAGGGAATGGGCTGAGGCAAAGAAAGAGCTACAAGAAGAACGTGATAATGTTCGGACGCTCACACTTGACAGGGAACAGACTATAAAAAATGCCATGAGACAAGTTGAAGAAATGGGAAAAGAACTTGCTAAGGCCTTGCAAGCGGTTGCAGCTGCTGAGGCTAGGGCTGCTGTTGCAGAGGCTCGATACTCTGATCTGGAGAAAAAGTTGAAATCTTCTGAAACCAAGGTTGTTGAGATTAATGGTGAATGTGGACCCTCCTCGTCCTCAGCTCATGAGGCTGTTGTGGACTTGCATATTGAGAAAGAAGAGATAGAAAAATTGAAGGAAGAAGCACAGGCTAACAAAGCTCATATGCTACAGTATAAAAGCATAGCAGAGGTGAATGAAGCTGCACTGAAACAGATGGAATATGCTCATGAAAACTTCAGGATTGAGGCAGATAAGCTAAAGAAATCACTGGAAGCAGAGGTTATGTCACTTAGAGAGAGGGTTTCTGAACTTGAAAATGAAGCTATTTTGAAGTCCAAAGAAGCAGCATCTACAGCTGCAGGAAATGAAGAGGCTCTTGCTTCTGCTTTAGCTGAAATTGGTAGTCTAAAGGAAGAAAATTCAATCAAAATGTCCCAAATTGCGGCGATTGAAATTCAAATTTCTGCTTTGAAAGATGATTTGGAGAACGAGCATCGACGTTGGCGTTCTGCACAAGACAATTATGAAAGACAGGTCATCCTACAATCAGAGACAATTCAGGAGTTGACAAAAACATCACAAGCTTTGGCTTTGCTGCAGAAGGAGGCTTCTGAATTGCGTAAACTGGCAGATGCAAAAAATGCTGAAAATAACGAATTAAAGGGGAAGTGGGAAGTGGAGAAGTCAATGTTAGAGGTGGCAAAGAATGAAGCTGAAAAGAAATATGATGAGATTAACGAACAGAACAAGATCCTACATAGTCGGCTAGAGGCTTTGCACATCAAATTGGCTGAAAAGGACCGCAGATCTGTTGGAATATCCTCGAGTAGTGGTTTGGATCCACTTGGTGATGCTGGATTACAGAATGTGATTAATTATCTACGTCGCTCGAAGGAAATAGCAGAAACAGAGATCTCTTTGTTGAAACAGGAAAAGTTGCGATTACAATCCCAACTTGAGAGTGCTTTAAAGGCAACAGAGACAGCCCAAGCATCACTTCATGCTGAGCGTGCAAATTCAAGAACATTGTTGTTCACAGAAGAAGAGATCAAATCCCTACAACTTCAGGTTAGAGAAATGAACTTGCTTCGGGAAAGCAACATGCAAATCAGAGAGGAGAACAAGCATAATTTTGAGGAGTGCCAGAAATTACGTGAAGTAGCTCAAAAAGCTAGGATTGAGACTGAGAATTTGGAGGTTCTACTGAGGGAGAGTCAAACTGAAGTGGAAACTTGTAAGAAAGAAATTGAAATGCAAAGGACGGAAAAAGATCAATTGGAAAAGAGGGTTGGTGAGTTGCTTGAGCAGTCCAAAAATATTGATGTGGAAGATTATGAGCGCATGAAACATGATTTTCATCAGATGCAGATAAATCTAAGAGAGAAGGATGCTCAAATAGAGGAAATGAAGAGACATGTATCTGAGAAGCAGGATAGAATCTCAAAGTTGGAACAAGACATTGCGAACAGCAGGTTGGAACTAAGTGAGAGGGAGAACAAGATAAATGATATTTTGCAAGCTGAGGCCAATATGAAAGCAGAGTTAGAGAAGCAAAAGAAGGTGACAGCTCAATTAAAGAAGAGGTTGGAGGCCTTGTCAAGGGAAAAGGAGGAACTGAGCAAAGAGAATCAAGCTCTTTCCAAACAGTTGGAGGATTACAAACAAGGGAAAAGGTCCATTGGGGATGTTTCAGGTGAACAGGCCATGAAAGAGAAGGAGAAGGAGAAGGAAAAAGATTCCAGGCTACAGACTCTGGAGAAAGCTCTCGAGAGGCAGAGGGAGGAGTATAGGAAGGAGAGGGATGACCATCGAATGGAGAAAGCAAAGCGCCTGAAGACTGAGAAGACAATCGTGGATTCTATTAAGAATGTTAATCAGGAGAAAGCAAAGCTGGTAGATGAACTTGAGAAACATAAGCTGGCTCTTAAGAGGGTCTCAGACGAACTCGAAAAACTCAAGCATGCCAAAGGCAATCTACCTGAGGGTACCTCAGTGGTTCAGCTTCTTTCTGGGCCTCTCTTGGATGATCTTGCTGCTGCCTATGCACTGACTGTAGAAAATTTTGAGAAGTTGGCACATTCAGTTTTTAGTGAGCTTGGAGCTCGTGCTCTGCCGCTAGATCCTTCTTCAACTGTTGATACTTCTTCTTCAGCAGCTACTACTGGTTTAACAGCTCCTGCCCAACCTCCAAGTATCTTGACTCCAGTGGTTCCTGCAACCAGCTATTCACCAGCCAAAGCTGCCGAAGAAAGAGAGAAGAGATTGGCTATTCTTAAAACCAATGCTGAAACGCGTAAAACTGGAAGGAAGTTGGTTCGGCCTCGTCTTGTGAAAAGTGAGGAGCCCCAAGGTGATGTAGATATGGCTGAGATTGAGGGGCCTAACAATGGAGGGAAACCTGCACCTTCTCAGGACACAGAAACTCAAACTCTACCCCCAGTTCGCAAACGTTTAGCTTCTTCATCCACTTCTGATTTACAAGAAGATACTCAGATTCAAGGGGAGACTACCTCAGATGTGGCACCACCTGTGCTAAAGAGATCCAGAGGCTCAGATTCCCCACAAGAGGCTGCTGAAGGACAGGCTGCTGCTTCTTTGGAAAATCTTGAAACTCTTCGGGCCATCGAAGAATCTTTTGATGCCATTGCTGATTTACCTCAAGGCTCCAATGAGGAAGCCATCGATGTTGAGAAAGAAGAGGCAGAGATTTCTGAAGGACAAACTGAGGAGCCAAAGGAACCAGCACAAGTAGATGGCACGAGTGAAGTTGAATTGCCGAATGAGAGAGCCAGTGCTGTGGAAGAGGTTTTGGTTAAGCCAATTGAAAGAGAAGTGGTGTTTGATGATGGACCAAAGGATCAGGCTGAGCAAGACATTCAACCATCAATGATAGAATTGGGAAGTGAAAAGGAAGAGGGAGAGCTGGACCCAGATGTTACGGATATTGAGGGTGGTGGTGACATGTGTAATATAACAGGGGGCACAACAATAGGTGAGGGTCAGCCTGAGACTGTGGTAGTTCCTGTGACTTCACCAGCTGGGGGTGATGAGGAAGGTCTAGTCACTGCAGCAGTGGACATTGGTGATATTAATTCCCCTGAGATTCTAAATGATGAAAAAACAGCCGAAGGTGATGTAATGGAAGAGGTTGCTGAGGGTTCTGATAAGTCGAATGATGGTAATGAGCAGATAGCCGTGGAGACTGACCAAACTCCTGAAGCTGCTATGGGTTCTGAAAGTACTTCGACTAGTACTAGTACTGTTGTAGATGTTGGTGTTTCAAAACAAGGTAGCCCCACCGTACCAGCAGATCCAGAAGAGGTAAAACAGGCATTGCCTGTTGGTAGCAGCTCAACTACCATAAATTTACAGGAGAGGGCTAGACAGAGAGCAATGCTTAGACAGGCTGGAGTTCTTTCTCCTTCAGTTGGTAGAGGCCGTGGAAGGGCAATAACTCGTGGTCGAGGTGTGCGGGGTGGACGGGGACGTGCTGGACGTGGACAATCATCTGGTGATCAAGGTTAA 6267 0.4407 MPLFISDEEYSRCSNDVALVAEKADSFIRDLYNELQTVKAQADAASITAEQTCSLLEQKYISLSQEFSKLESQNAQLNSSLQERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELHKSKRQLLEFLEHKDLEISEKNATIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACARLLQEKELIERHNVWLNDELTSKVKSLTELRRTHVELEADMSTKHSDVERRLNECSSSLKWNKERVKELEMKLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAGELEGVIKALETHLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLITGTTWLDSFQTNDMVEDNCMLVPKIPAGVSGTALAASLLRDGWSLAKMYSKYQEAVDALRHEQLGRKHSEAMLEQVLHEIEEKAVVILDERAEHERMVEGYSAINQKLQQSLSEQSNLDKTIQELKADLRQQGRDYAVAQKEIVDLEKQVTVLLKECRDIQLRCGLVGHDFADNGTITAADEMNAESNSDEVISERLLTFRDINGLVEQNVQLRSLVRSLSDQLEDKDMELKEKFELELKKHTDQAASKVAAVLERAEEQGRMIESLHTSVAMYKRLYEEEHKLHSSFPHSAEAAPENGRKDLMLLLEGSQEATKKAQEQAAERVRSLQEDLAKSRSEIISLRSERDKFALEANFARERLESFMKEFEHQRDEANGILARNVEFSQLIVNYQRKIRESSESLHTVEELSRKLTMEVSFLKHEKEMLSNSEKRASDEVRSLSERVHRLQATLDTIHSTEEFREEARTVERRKQEEHIRQIEREWAEAKKELQEERDNVRTLTLDREQTIKNAMRQVEEMGKELAKALQAVAAAEARAAVAEARYSDLEKKLKSSETKVVEINGECGPSSSSAHEAVVDLHIEKEEIEKLKEEAQANKAHMLQYKSIAEVNEAALKQMEYAHENFRIEADKLKKSLEAEVMSLRERVSELENEAILKSKEAASTAAGNEEALASALAEIGSLKEENSIKMSQIAAIEIQISALKDDLENEHRRWRSAQDNYERQVILQSETIQELTKTSQALALLQKEASELRKLADAKNAENNELKGKWEVEKSMLEVAKNEAEKKYDEINEQNKILHSRLEALHIKLAEKDRRSVGISSSSGLDPLGDAGLQNVINYLRRSKEIAETEISLLKQEKLRLQSQLESALKATETAQASLHAERANSRTLLFTEEEIKSLQLQVREMNLLRESNMQIREENKHNFEECQKLREVAQKARIETENLEVLLRESQTEVETCKKEIEMQRTEKDQLEKRVGELLEQSKNIDVEDYERMKHDFHQMQINLREKDAQIEEMKRHVSEKQDRISKLEQDIANSRLELSERENKINDILQAEANMKAELEKQKKVTAQLKKRLEALSREKEELSKENQALSKQLEDYKQGKRSIGDVSGEQAMKEKEKEKEKDSRLQTLEKALERQREEYRKERDDHRMEKAKRLKTEKTIVDSIKNVNQEKAKLVDELEKHKLALKRVSDELEKLKHAKGNLPEGTSVVQLLSGPLLDDLAAAYALTVENFEKLAHSVFSELGARALPLDPSSTVDTSSSAATTGLTAPAQPPSILTPVVPATSYSPAKAAEEREKRLAILKTNAETRKTGRKLVRPRLVKSEEPQGDVDMAEIEGPNNGGKPAPSQDTETQTLPPVRKRLASSSTSDLQEDTQIQGETTSDVAPPVLKRSRGSDSPQEAAEGQAAASLENLETLRAIEESFDAIADLPQGSNEEAIDVEKEEAEISEGQTEEPKEPAQVDGTSEVELPNERASAVEEVLVKPIEREVVFDDGPKDQAEQDIQPSMIELGSEKEEGELDPDVTDIEGGGDMCNITGGTTIGEGQPETVVVPVTSPAGGDEEGLVTAAVDIGDINSPEILNDEKTAEGDVMEEVAEGSDKSNDGNEQIAVETDQTPEAAMGSESTSTSTSTVVDVGVSKQGSPTVPADPEEVKQALPVGSSSTTINLQERARQRAMLRQAGVLSPSVGRGRGRAITRGRGVRGGRGRAGRGQSSGDQG* 2089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1430 2088 PANTHER NUCLEOPROTEIN TPR-RELATED 1 2079 - -
Vvi19g1430 2088 Coils Coil 878 933 - -
Vvi19g1430 2088 Coils Coil 941 968 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1680 1779 - -
Vvi19g1430 2088 Coils Coil 1061 1092 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1621 1652 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1946 2035 - -
Vvi19g1430 2088 Coils Coil 688 715 - -
Vvi19g1430 2088 Coils Coil 239 259 - -
Vvi19g1430 2088 Coils Coil 1257 1277 - -
Vvi19g1430 2088 Coils Coil 723 743 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1680 1699 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1878 1931 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 2048 2088 - -
Vvi19g1430 2088 Pfam TPR/MLP1/MLP2-like protein 1046 1173 IPR012929 GO:0006606
Vvi19g1430 2088 Coils Coil 165 185 - -
Vvi19g1430 2088 Coils Coil 1103 1137 - -
Vvi19g1430 2088 Coils Coil 1142 1169 - -
Vvi19g1430 2088 Coils Coil 983 1028 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1796 1845 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1950 1970 - -
Vvi19g1430 2088 Coils Coil 1373 1470 - -
Vvi19g1430 2088 Coils Coil 800 820 - -
Vvi19g1430 2088 Coils Coil 1535 1569 - -
Vvi19g1430 2088 Coils Coil 1205 1239 - -
Vvi19g1430 2088 Coils Coil 839 866 - -
Vvi19g1430 2088 Coils Coil 317 358 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1448 1495 - -
Vvi19g1430 2088 Coils Coil 53 94 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1622 1652 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1713 1752 - -
Vvi19g1430 2088 Coils Coil 478 533 - -
Vvi19g1430 2088 Coils Coil 1295 1357 - -
Vvi19g1430 2088 Coils Coil 1489 1523 - -
Vvi19g1430 2088 MobiDBLite consensus disorder prediction 1971 2008 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1430 K09291 - vvi:100251875 3789.96